5N9J
Core Mediator of transcriptional regulation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth U] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 8 | 8091510 | 3002515 | SCOP2B (2022-06-29) |
L [auth W] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 17 | 8091517 | 3002517 | SCOP2B (2022-06-29) |
M [auth X] | SCOP2B Superfamily | CYTH-like phosphatases | 8090012 | 3001426 | SCOP2B (2022-06-29) |
N [auth Y] | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 20 | 8091514 | 4007167 | SCOP2 (2022-06-29) |
N [auth Y] | SCOP2 Superfamily | CYTH-like phosphatases | 8091515 | 3001426 | SCOP2 (2022-06-29) |
O [auth Z] | SCOP2B Superfamily | Mediator subcomplex-like | 8051779 | 3001613 | SCOP2B (2022-06-29) |
H [auth R] | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 31 | 8080721 | 4005652 | SCOP2 (2022-06-29) |
H [auth R] | SCOP2 Superfamily | Mediator of RNA polymerase II transcription subunit 31 | 8105981 | 3002846 | SCOP2 (2022-06-29) |
I [auth S] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 6 | 8091512 | 3002516 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth U] | Med8 | e5n9jU1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 8 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 8 | F: Med8 | ECOD (1.6) |
K [auth V] | Med11 | e5n9jV1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 11 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 11 | F: Med11 | ECOD (1.6) |
L [auth W] | Med17 | e5n9jW1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 17 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 17 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 17 | F: Med17 | ECOD (1.6) |
M [auth X] | Med18 | e5n9jX1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: Med18 | ECOD (1.6) |
N [auth Y] | Med20 | e5n9jY1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: Med20 | ECOD (1.6) |
O [auth Z] | Med22 | e5n9jZ1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 22 | F: Med22 | ECOD (1.6) |
D | Med21 | e5n9jD1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: Med21 | ECOD (1.6) |
E | Med7 | e5n9jE1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: MED7 hinge region | F: Med7 | ECOD (1.6) |
E | Med7_like | e5n9jE2 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: Med7_like | ECOD (1.6) |
H [auth R] | Med31 | e5n9jR1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: Med31 | ECOD (1.6) |
I [auth S] | Med6 | e5n9jS1 | A: extended segments | X: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 6 | F: Med6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
K [auth V] | 1.10.287.3490 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
M [auth X] | 2.40.320.10 | Mainly Beta | Beta Barrel | Hypothetical Protein Pfu-838710-001 | Hypothetical Protein Pfu-838710-001 | CATH (4.3.0) |
H [auth R] | 1.10.10.1340 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Mediator of RNA polymerase II, submodule Med31 (Soh1) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08638 | Mediator complex subunit MED14 (Med14) | Mediator complex subunit MED14 | - | Family | |
K [auth V] | PF10280 | Mediator complex protein (Med11) | Mediator complex protein | - | Family |
M [auth X] | PF09637 | Med18 protein (Med18) | Med18 protein | Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ... | Domain |
O [auth Z] | PF06179 | Surfeit locus protein 5 subunit 22 of Mediator complex (Med22) | Surfeit locus protein 5 subunit 22 of Mediator complex | - | Family |
PF09748 | Transcription factor subunit Med10 of Mediator complex (Med10) | Transcription factor subunit Med10 of Mediator complex | - | Family | |
PF08633 | Rox3 mediator complex subunit (Rox3) | Rox3 mediator complex subunit | - | Family | |
PF05983 | MED7 protein (Med7) | MED7 protein | - | Family | |
PF10018 | Vitamin-D-receptor interacting Mediator subunit 4 (Med4) | Vitamin-D-receptor interacting Mediator subunit 4 | - | Family | |
H [auth R] | PF05669 | SOH1 (Med31) | SOH1 | - | Family |
I [auth S] | PF04934 | MED6 mediator sub complex component (Med6) | MED6 mediator sub complex component | - | Family |