Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5ms2b_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like GABARAP-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyUbiquitin-like 8038494 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08172e5ms2A1 A: alpha bundlesX: RavZ C-terminal domain (From Topology)H: RavZ C-terminal domain (From Topology)T: RavZ C-terminal domainF: EUF08172ECOD (1.6)
AEUF08535e5ms2A2 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: EUF08535ECOD (1.6)
BAtg8e5ms2B1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Atg8ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22225RavZ C-terminal PI3P-binding domain (RavZ_C)RavZ C-terminal PI3P-binding domainThe intracellular pathogen L. pneumophila interferes with autophagy by delivering an effector protein, RavZ, into the host cytosol. This effector protein cleaves membrane-conjugated Atg8/LC3 proteins from pre-autophagosomal structures. RavZ is a two ...The intracellular pathogen L. pneumophila interferes with autophagy by delivering an effector protein, RavZ, into the host cytosol. This effector protein cleaves membrane-conjugated Atg8/LC3 proteins from pre-autophagosomal structures. RavZ is a two domain protein consisting of an N-terminal catalytic domain and a C-terminal phosphatidylinositol 3-phosphate (PI3P)-binding domain [1]. RavZ targets the autophagosome via the PI3P-binding domain.
Domain
PF02991Autophagy protein Atg8 ubiquitin like (ATG8)Autophagy protein Atg8 ubiquitin likeLight chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of ...Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Legionella pneumophila effector protein RavZ
Microtubule-associated proteins 1A/1B light chain 3B

InterPro: Protein Family Classification InterPro Database Homepage