5MKL
Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth A1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
AA [auth F4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
B [auth B1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
BA [auth G4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
D [auth D1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
E [auth E1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
G [auth G1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
H [auth A2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
K [auth D2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
M [auth F2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
N [auth G2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
P [auth B3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
Q [auth C3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
R [auth D3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
S [auth E3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
T [auth F3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
U [auth G3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
V [auth A4] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8063449 | 4001809 | SCOP2 (2022-06-29) |
V [auth A4] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2 (2022-06-29) |
W [auth B4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
X [auth C4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
Y [auth D4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
Z [auth E4] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
C [auth C1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
F [auth F1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
I [auth B2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
J [auth C2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
L [auth E2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
O [auth A3] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063450 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth A1] | LSM | e5mklA11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
AA [auth F4] | LSM | e5mklF41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
B [auth B1] | LSM | e5mklB11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
BA [auth G4] | LSM | e5mklG41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
D [auth D1] | LSM | e5mklD11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
E [auth E1] | LSM | e5mklE11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
G [auth G1] | LSM | e5mklG11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
H [auth A2] | LSM | e5mklA21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
K [auth D2] | LSM | e5mklD21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
M [auth F2] | LSM | e5mklF21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
N [auth G2] | LSM | e5mklG21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
P [auth B3] | LSM | e5mklB31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Q [auth C3] | LSM | e5mklC31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
R [auth D3] | LSM | e5mklD31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
S [auth E3] | LSM | e5mklE31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
T [auth F3] | LSM | e5mklF31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
U [auth G3] | LSM | e5mklG31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
V [auth A4] | LSM | e5mklA41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
W [auth B4] | LSM | e5mklB41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
X [auth C4] | LSM | e5mklC41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Y [auth D4] | LSM | e5mklD41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Z [auth E4] | LSM | e5mklE41 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
C [auth C1] | LSM | e5mklC11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
F [auth F1] | LSM | e5mklF11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
I [auth B2] | LSM | e5mklB21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
J [auth C2] | LSM | e5mklC21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
L [auth E2] | LSM | e5mklE21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
O [auth A3] | LSM | e5mklA31 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001163 | Sm domain, eukaryotic/archaea-type | Domain | |
IPR016487 | Sm-like protein Lsm6/SmF | Family | |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR047575 | Sm domain | Domain |