5MDM
Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | d5mdme_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | automated matches | automated matches | (Chandipura virus ) [TaxId: 11272 ], | SCOPe (2.08) |
B [auth F] | d5mdmf_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | automated matches | automated matches | (Chandipura virus ) [TaxId: 11272 ], | SCOPe (2.08) |
C [auth A] | d5mdma_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | automated matches | automated matches | (Chandipura virus ) [TaxId: 11272 ], | SCOPe (2.08) |
D [auth C] | d5mdmc_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | automated matches | automated matches | (Chandipura virus ) [TaxId: 11272 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8054361 | 3001498 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8054361 | 3001498 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8054361 | 3001498 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8054361 | 3001498 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF00974 | e5mdmE2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
A [auth E] | PF00974 | e5mdmE3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
A [auth E] | PF00974 | e5mdmE1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: PF00974 | ECOD (1.6) |
B [auth F] | PF00974 | e5mdmF3 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
B [auth F] | PF00974 | e5mdmF1 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
B [auth F] | PF00974 | e5mdmF2 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: PF00974 | ECOD (1.6) |
C [auth A] | PF00974 | e5mdmA2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
C [auth A] | PF00974 | e5mdmA3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
C [auth A] | PF00974 | e5mdmA1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: PF00974 | ECOD (1.6) |
D [auth C] | PF00974 | e5mdmC2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
D [auth C] | PF00974 | e5mdmC3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: PF00974 | ECOD (1.6) |
D [auth C] | PF00974 | e5mdmC1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: PF00974 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], B [auth F], C [auth A], D [auth C] | PF00974 | Rhabdovirus spike glycoprotein (Rhabdo_glycop) | Rhabdovirus spike glycoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], B [auth F], C [auth A], D [auth C] | IPR001903 | Rhabdovirus glycoprotein | Family |