Crystal structure of Staphylococcus capitis divalent metal ion transporter (DMT) in complex with nanobody
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | d5m94d_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
| B | d5m94b_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | SasG_E | e5m94D1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain | T: Tetrapyrrole methylase C-terminal domain | F: SasG_E | ECOD (v294.1) |
| B | SasG_E | e5m94B1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain | T: Tetrapyrrole methylase C-terminal domain | F: SasG_E | ECOD (v294.1) |
| C | SasG_E | e5m94C1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain | T: Tetrapyrrole methylase C-terminal domain | F: SasG_E | ECOD (v294.1) |
| A | SasG_E | e5m94A1 | A: a/b three-layered sandwiches | X: Tetrapyrrole methylase C-terminal domain-like | H: Tetrapyrrole methylase C-terminal domain | T: Tetrapyrrole methylase C-terminal domain | F: SasG_E | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| nAb camelid | VH | Vicugna pacos (alpaca) | IGHV3S53*01, IGHJ6*01 | V-DOMAIN VH | IG | VH | IMGT (202615-0) |














