5M73
Structure of the human SRP S domain with SRP72 RNA-binding domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | SRP19 | 8037027 | 3000831 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | SRP19 | 8037027 | 3000831 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TPR-like | 8053751 | 3001345 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | TPR-like | 8053751 | 3001345 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | SRP19 | e5m73B1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: SRP19 | ECOD (1.6) |
F | SRP19 | e5m73F1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: SRP19 | ECOD (1.6) |
C | SRP68 | e5m73C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SRP68 | ECOD (1.6) |
G | SRP68 | e5m73G1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SRP68 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.56.30 | Alpha Beta | 2-Layer Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 1 | CATH (4.3.0) |
F | 3.30.56.30 | Alpha Beta | 2-Layer Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 1 | CATH (4.3.0) |
C | 1.10.3450.40 | Mainly Alpha | Orthogonal Bundle | Hyaluronidase domain-like | Signal recognition particle, SRP68 subunit, RNA-binding domain | CATH (4.3.0) |
G | 1.10.3450.40 | Mainly Alpha | Orthogonal Bundle | Hyaluronidase domain-like | Signal recognition particle, SRP68 subunit, RNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01922 | SRP19 protein (SRP19) | SRP19 protein | - | Family | |
PF16969 | RNA-binding signal recognition particle 68 (SRP68) | RNA-binding signal recognition particle 68 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002778 | Signal recognition particle, SRP19 subunit | Family | |
IPR036521 | Signal recognition particle, subunit SRP19-like superfamily | Homologous Superfamily | |
IPR038253 | SRP68, N-terminal domain superfamily | Homologous Superfamily | |
IPR034652 | Signal recognition particle subunit SRP68, RNA-binding domain | Domain | |
IPR026258 | Signal recognition particle subunit SRP68 | Family | |
IPR013699 | Signal recognition particle, SRP72 subunit, RNA-binding | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR031545 | Signal recognition particle subunit SRP72, TPR-like repeat | Repeat | |
IPR026270 | Signal recognition particle, SRP72 subunit | Family | |
IPR019734 | Tetratricopeptide repeat | Repeat |