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 5M59 | pdb_00005m59

Crystal structure of Chaetomium thermophilum Brr2 helicase core in complex with Prp8 Jab1 domain

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth G]SasG_Ee5m59G1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
F [auth E]SasG_Ee5m59E1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
D [auth C]SasG_Ee5m59C1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
B [auth A]SasG_Ee5m59A1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
C [auth D]SasG_Ee5m59D1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
G [auth H]SasG_Ee5m59H1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
E [auth F]SasG_Ee5m59F1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)
A [auth B]SasG_Ee5m59B1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: SasG_EECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth C]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
B [auth A]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B [auth A]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
B [auth A]1.10.3380.10 Mainly Alpha Orthogonal Bundle Sec63 N-terminal domain-like fold Sec63 N-terminal domain-like domainCATH (4.3.0)
B [auth A]1.10.150.20 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
B [auth A]2.60.40.150 Mainly Beta Sandwich Immunoglobulin-like C2 domainCATH (4.3.0)
C [auth D]3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase domain 2CATH (4.3.0)
G [auth H]3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase domain 2CATH (4.3.0)
E [auth F]3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase domain 2CATH (4.3.0)
A [auth B]3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A],
D [auth C],
F [auth E],
H [auth G]		PF02889Sec63 Brl domain (Sec63)Sec63 Brl domain- Family
B [auth A],
D [auth C],
F [auth E],
H [auth G]		PF23445Winged Helix-turn-helix domain (WHD_SNRNP200)Winged Helix-turn-helix domainThis entry represents a winged Helix-Turn-Helix domain found in a variety of helicase enzymes. Domain
B [auth A],
D [auth C],
F [auth E],
H [auth G]		PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
B [auth A],
D [auth C],
F [auth E],
H [auth G]		PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
A [auth B],
C [auth D],
E [auth F],
G [auth H]		PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1]. Domain