5M3K
A multi-component acyltransferase PhlABC from Pseudomonas protegens
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HMG_CoA_synt_C | e5m3kA1 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: HMG_CoA_synt_C | ECOD (1.6) |
A | HMG_CoA_synt_N | e5m3kA2 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: HMG_CoA_synt_N | ECOD (1.6) |
D | HMG_CoA_synt_C | e5m3kD1 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: HMG_CoA_synt_C | ECOD (1.6) |
D | HMG_CoA_synt_N | e5m3kD2 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: HMG_CoA_synt_N | ECOD (1.6) |
B | UNK_F_TYPE | e5m3kB2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: UNK_F_TYPE | ECOD (1.6) |
B | DUF35_N | e5m3kB1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: DUF35_N | ECOD (1.6) |
E | UNK_F_TYPE | e5m3kE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: UNK_F_TYPE | ECOD (1.6) |
E | DUF35_N | e5m3kE2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: DUF35_N | ECOD (1.6) |
C | Thiolase_C_1 | e5m3kC1 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: Thiolase_C_1 | ECOD (1.6) |
C | ACP_syn_III | e5m3kC2 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: ACP_syn_III | ECOD (1.6) |
F | Thiolase_C_1 | e5m3kF1 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: Thiolase_C_1 | ECOD (1.6) |
F | ACP_syn_III | e5m3kF2 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: ACP_syn_III | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08541 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal (ACP_syn_III_C) | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal | This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. | Domain | |
PF12172 | Rubredoxin-like zinc ribbon domain (DUF35_N) (DUF35_N) | Rubredoxin-like zinc ribbon domain (DUF35_N) | This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in Swiss:O53566. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin ... | Domain | |
PF01796 | DUF35 OB-fold domain, acyl-CoA-associated (OB_aCoA_assoc) | DUF35 OB-fold domain, acyl-CoA-associated | The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain and a C-terminal OB fold domain represented in this entry. OB-folds are frequently found to bind nucleic acids suggesting thi ... | Domain | |
PF00108 | Thiolase, N-terminal domain (Thiolase_N) | Thiolase, N-terminal domain | Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase. | Domain | |
PF22691 | Thiolase C-terminal domain-like (Thiolase_C_1) | Thiolase C-terminal domain-like | This domain is found C-terminal in a number of thiolases and their homologues. Thiolases are essential CoA-dependent enzymes in lipid metabolism. This domain folds into a four-stranded antiparallel beta-sheet with helices packed on one side. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
PhlA | - | - | ||
2,4-diacetylphloroglucinol biosynthesis protein PhlB | - | - | ||
2,4-diacetylphloroglucinol biosynthesis protein PhlC | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016039 | Thiolase-like | Homologous Superfamily | |
IPR013747 | Beta-ketoacyl-[acyl-carrier-protein] synthase III, C-terminal | Domain | |
IPR002878 | Domain of unknown function DUF35, OB-fold, C-terminal | Domain | |
IPR052513 | Thioester Dehydratase-Related Protein | Family | |
IPR022002 | Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR016039 | Thiolase-like | Homologous Superfamily | |
IPR020616 | Thiolase, N-terminal | Domain | |
IPR002155 | Thiolase | Family |