5M1H
Structure of a Spumaretrovirus Gag central domain reveals an ancient retroviral capsid
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF20672 | e5m1hA2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF20672 | ECOD (1.6) |
A | PF20672 | e5m1hA1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF20672 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20672 | Spumavirus Gag polyprotein, conserved central domain (Gag_FV_central) | Spumavirus Gag polyprotein, conserved central domain | This is the conserved central domain of the Gag polyprotein from Foamyviruses (FVs) or Spuma-retroviruses. Gag is the major structural protein required for genome packaging virion assembly, trafficking and egress. This domain has an all alpha-helical ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004957 | Gag polyprotein, N-terminal domain | Domain | |
IPR049099 | Gag polyprotein, C-terminal | Domain | |
IPR049101 | Gag polyprotein, conserved central domain | Domain |