5LSO
Crystal structure of SPF45 UHM domain with cyclic peptide inhibitor
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Canonical RBD | 8065226 | 4000236 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain, RBD | 8065227 | 3000110 | SCOP2 (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8065227 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RRM_1_9 | e5lsoA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_9 | ECOD (1.6) |
C [auth B] | RRM_1_9 | e5lsoB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_9 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
C [auth B] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR003954 | RNA recognition motif domain, eukaryote | Domain |
A, C [auth B] | IPR040052 | Splicing factor 45 | Family |
A, C [auth B] | IPR000504 | RNA recognition motif domain | Domain |
A, C [auth B] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR034653 | SPF45, RNA recognition motif | Domain |
A, C [auth B] | IPR000467 | G-patch domain | Domain |