Annotations: 5LDE

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DED	e5ldeA2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: DED	ECOD (1.6)
A	IgG_binding_B	e5ldeA3	A: a+b two layers	X: beta-Grasp	H: Immunoglobulin-binding domains (From Topology)	T: Immunoglobulin-binding domains	F: IgG_binding_B	ECOD (1.6)
B	DED	e5ldeB2	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: DED	ECOD (1.6)
B	IgG_binding_B	e5ldeB3	A: a+b two layers	X: beta-Grasp	H: Immunoglobulin-binding domains (From Topology)	T: Immunoglobulin-binding domains	F: IgG_binding_B	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01378	B domain (IgG_binding_B)	B domain	This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding protein G.	Domain
A, B	PF01335	Death effector domain (DED)	Death effector domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Immunoglobulin G-binding protein G,Viral FLICE protein	protein-containing complex binding binding immunoglobulin binding IgG binding	cellular process apoptotic process cell death programmed cell death cellular response to stimulus symbiont-mediated activation of host NF-kappaB cascade symbiont-mediated perturbation of host cellular process regulation of biological process biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus signaling biological regulation symbiont-mediated activation of host signal transduction pathway cellular process apoptotic process cell death programmed cell death cellular response to stimulus symbiont-mediated activation of host NF-kappaB cascade symbiont-mediated perturbation of host cellular process regulation of biological process biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus signaling biological regulation symbiont-mediated activation of host signal transduction pathway biological process involved in interaction with host canonical NF-kappaB signal transduction intracellular signal transduction biological process involved in symbiotic interaction cell communication symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated perturbation of host process intracellular signaling cassette signal transduction symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism regulation of apoptotic process regulation of programmed cell death regulation of killing of cells of another organism disruption of cell in another organism symbiont-mediated perturbation of host apoptosis killing of cells of another organism symbiont-mediated perturbation of host programmed cell death regulation of cell killing disruption of anatomical structure in another organism cell killing	extracellular region cellular anatomical entity
C [auth R], D [auth S]	Inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, isoform CRA_a	protein binding binding protein domain specific binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity protein heterodimerization activity protein dimerization activity transferrin receptor binding signaling receptor binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding polyubiquitin modification-dependent protein binding protein binding binding protein domain specific binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity protein heterodimerization activity protein dimerization activity transferrin receptor binding signaling receptor binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding polyubiquitin modification-dependent protein binding modification-dependent protein binding K63-linked polyubiquitin modification-dependent protein binding identical protein binding protein homodimerization activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis positive regulation of cell communication regulation of cellular process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling immune response-regulating cell surface receptor signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process modification-dependent protein catabolic process positive regulation of proteolysis metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process apoptotic process cell death programmed cell death biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to other organism innate immune response response to external biotic stimulus defense response to bacterium response to bacterium positive regulation of T cell receptor signaling pathway regulation of antigen receptor-mediated signaling pathway regulation of T cell receptor signaling pathway positive regulation of antigen receptor-mediated signaling pathway positive regulation of DNA-binding transcription factor activity cellular biosynthetic process positive regulation of NF-kappaB transcription factor activity RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macroautophagy autophagy positive regulation of cellular metabolic process regulation of autophagy cellular catabolic process positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy regulation of macroautophagy regulation of cellular catabolic process positive regulation of cellular catabolic process response to virus vesicle localization establishment of organelle localization localization cellular localization organelle localization establishment of vesicle localization establishment of localization in cell establishment of localization inflammatory response anoikis positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol mitotic spindle membrane-bounded organelle intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol mitotic spindle membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex catalytic complex IkappaB kinase complex transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups serine/threonine protein kinase complex ubiquitin ligase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B	IPR051290	CASP8/FADD-like_regulator	Unknown
A, B	IPR001875	Death effector domain	Domain
A, B	IPR009063	Immunoglobulin/albumin-binding domain superfamily	Homologous Superfamily
A, B	IPR019950	M protein-type anchor domain	Domain
A, B	IPR005877	YSIRK Gram-positive signal peptide	Domain
A, B	IPR000724	IgG-binding B	Domain
A, B	IPR035152	GA-like domain	Domain
A, B	IPR019931	LPXTG cell wall anchor domain	Domain
C [auth R], D [auth S]	IPR034735	NEMO, Zinc finger	Domain
C [auth R], D [auth S]	IPR021063	NF-kappa-B essential modulator NEMO, N-terminal	Domain
C [auth R], D [auth S]	IPR032419	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Domain
C [auth R], D [auth S]	IPR051301	Optineurin/NF-kappa-B Essential Modulator	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth R], D [auth S]	Pharos: Q9Y6K9	incontinentia pigmenti immunodeficiency without anhidrotic ectodermal dysplasia osteopetrosis anhidrotic ectodermal dysplasia-immunodeficiency-osteopetrosis-lymphedema syndrome immunodeficiency 33 non-alcoholic fatty liver disease ectodermal dysplasia and immune deficiency Invasive pneumococcal disease, recurrent isolated, 2 ectodermal dysplasia and immunodeficiency 1 nevus of Ito ectodermal dysplasia syndrome intellectual disability Ito hypomelanosis lymphatic system disease hyper-IgM syndrome type 1 incontinentia pigmenti immunodeficiency without anhidrotic ectodermal dysplasia osteopetrosis anhidrotic ectodermal dysplasia-immunodeficiency-osteopetrosis-lymphedema syndrome immunodeficiency 33 non-alcoholic fatty liver disease ectodermal dysplasia and immune deficiency Invasive pneumococcal disease, recurrent isolated, 2 ectodermal dysplasia and immunodeficiency 1 nevus of Ito ectodermal dysplasia syndrome intellectual disability Ito hypomelanosis lymphatic system disease hyper-IgM syndrome type 1 lung benign neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.