5KYC
Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin (malonate bound)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5kycb_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Ubiquitin carboxyl-terminal hydrolase, UCH | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth C] | d5kycc_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Cysteine proteinases | 8043739 | 3001808 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00443 | e5kycB1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00443 | ECOD (1.6) |
B [auth C] | PF00240 | e5kycC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.20.210.10 | Mainly Beta | Single Sheet | ubp-family deubiquitinating enzyme fold | ubp-family deubiquitinating enzyme superfamily | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00443 | Ubiquitin carboxyl-terminal hydrolase (UCH) | Ubiquitin carboxyl-terminal hydrolase | - | Family |
B [auth C] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR028889 | Ubiquitin specific protease domain | Domain |
A [auth B] | IPR018200 | Ubiquitin specific protease, conserved site | Conserved Site |
A [auth B] | IPR024729 | Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain | Domain |
A [auth B] | IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily |
A [auth B] | IPR002083 | MATH/TRAF domain | Domain |
A [auth B] | IPR029346 | Ubiquitin carboxyl-terminal hydrolase, C-terminal | Domain |
A [auth B] | IPR050164 | Ubiquitin carboxyl-terminal hydrolases | Family |
A [auth B] | IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Domain |
A [auth B] | IPR008974 | TRAF-like | Homologous Superfamily |
B [auth C] | IPR019954 | Ubiquitin conserved site | Conserved Site |
B [auth C] | IPR050158 | Ubiquitin and ubiquitin-like | Family |
B [auth C] | IPR000626 | Ubiquitin-like domain | Domain |
B [auth C] | IPR019956 | Ubiquitin domain | Domain |
B [auth C] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth B] | Q93009 | : |
B [auth C] | P0CG47 | :