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 5KMS | pdb_00005kms

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DSulfotransfer_2e5kmsD1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: Alpha-crystallin B chain N-terminal domainT: Alpha-crystallin B chain N-terminal domainF: Sulfotransfer_2ECOD (v295.2)
CSulfotransfer_2e5kmsC1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: Alpha-crystallin B chain N-terminal domainT: Alpha-crystallin B chain N-terminal domainF: Sulfotransfer_2ECOD (v295.2)
BSulfotransfer_2e5kmsB1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: Alpha-crystallin B chain N-terminal domainT: Alpha-crystallin B chain N-terminal domainF: Sulfotransfer_2ECOD (v295.2)
ASulfotransfer_2e5kmsA1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: Alpha-crystallin B chain N-terminal domainT: Alpha-crystallin B chain N-terminal domainF: Sulfotransfer_2ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.50.50.100 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain CATH (4.3.0)
C3.50.50.100 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain CATH (4.3.0)
B3.50.50.100 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain CATH (4.3.0)
A3.50.50.100 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF07992Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2)Pyridine nucleotide-disulphide oxidoreductaseThis family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
FAD-dependent pyridine nucleotide-disulfide oxidoreductase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR023753FAD/NAD(P)-binding domainDomain
A, B, C, D
IPR051169NADH:quinone oxidoreductase/NAD(P)H-quinone oxidoreductaseFamily
A, B, C, D
IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily