5KEN
EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F | SCOP2B Superfamily | Virus ectodomain | 8039635 | 3001628 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Virus ectodomain | 8039635 | 3001628 | SCOP2B (2022-06-29) |
L [auth M] | SCOP2B Superfamily | Virus ectodomain | 8039635 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F | Ebola-like_HR1-HR2 | e5kenF1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
B | Ebola-like_HR1-HR2 | e5kenB1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
L [auth M] | Ebola-like_HR1-HR2 | e5kenM1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
A | Filo_glycop | e5kenA1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
E | Filo_glycop | e5kenE1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
K | Filo_glycop | e5kenK1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
G | V-set_8 | e5kenG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
M [auth N] | V-set_8 | e5kenN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C | V-set_8 | e5kenC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | V-set | e5kenD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H | V-set | e5kenH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
N [auth O] | V-set | e5kenO1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
I | V-set | e5kenI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
O [auth P] | V-set | e5kenP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
P [auth Q] | V-set_8 | e5kenQ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
J | V-set_8 | e5kenJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C, G, M [auth N] | Fab C4G7 | VH | Mus musculus (house mouse) | IGHV1-42*01, IGHJ3*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
D, H, N [auth O] | Fab C4G7 | V-KAPPA | Mus musculus (house mouse) | IGKV12-44*01, IGKJ4*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
I, O [auth P] | Fab C13C6 | V-KAPPA | Mus musculus (house mouse) | IGKV6-13*01, IGKJ5*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
J, P [auth Q] | Fab C13C6 | VH | Mus musculus (house mouse) | IGHV8-8*01, IGHJ4*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C, G, M [auth N] | Heavy Chain | IGHV1 | - | ebola surface glycoprotein, gp2 | SAbDab (2024-09-13) |
D, H, N [auth O] | Light Chain | IGKV12 | Kappa | ebola surface glycoprotein, gp2 | SAbDab (2024-09-13) |
I, O [auth P] | Light Chain | IGKV6 | Kappa | ebola surface glycoprotein, gp1 | SAbDab (2024-09-13) |
J, P [auth Q] | Heavy Chain | IGHV8 | - | ebola surface glycoprotein, gp1 | SAbDab (2024-09-13) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
C, G, M [auth N] | Larcaviximab | Zaire Ebolavirus Glycoprotein | Therapeutic SAbDab (2024-09-13) |
D, H, N [auth O] | Larcaviximab | Zaire Ebolavirus Glycoprotein | Therapeutic SAbDab (2024-09-13) |
I, O [auth P] | Cosfroviximab | Zaire Ebolavirus Glycoprotein | Therapeutic SAbDab (2024-09-13) |
J, P [auth Q] | Cosfroviximab | Zaire Ebolavirus Glycoprotein | Therapeutic SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, F, L [auth M] | PF22307 | Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2) | Envelope glycoprotein GP2-like, HR1-HR2 | This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ... | Domain |
PF01611 | Filovirus glycoprotein (Filo_glycop) | Filovirus glycoprotein | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B, F, L [auth M] | IPR014625 | Filoviruses glycoprotein | Family |
B, F, L [auth M] | IPR002561 | Filoviruses glycoprotein, extracellular domain | Domain |
IPR014625 | Filoviruses glycoprotein | Family | |
IPR002561 | Filoviruses glycoprotein, extracellular domain | Domain |