Annotations: 5KEN

EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Thera-SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth M]	SCOP2B Superfamily	Virus ectodomain	8039635	3001628	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Virus ectodomain	8039635	3001628	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus ectodomain	8039635	3001628	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth Q]	Oxidored_q2	e5kenQ1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
J	Oxidored_q2	e5kenJ1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
O [auth P]	Oxidored_q2	e5kenP1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
I	Oxidored_q2	e5kenI1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
N [auth O]	Oxidored_q2	e5kenO1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
H	Oxidored_q2	e5kenH1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
D	Oxidored_q2	e5kenD1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
M [auth N]	Oxidored_q2	e5kenN1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
G	Oxidored_q2	e5kenG1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
C	Oxidored_q2	e5kenC1	A: alpha arrays	X: TcA alpha-helical shell domain	H: TcA alpha-helical shell domain	T: TcA alpha-helical shell domain	F: Oxidored_q2	ECOD (v295.2)
L [auth M]	tRNA_anti-codon	e5kenM1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
F	tRNA_anti-codon	e5kenF1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
B	tRNA_anti-codon	e5kenB1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
K	tRNA_anti-codon	e5kenK1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
E	tRNA_anti-codon	e5kenE1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
A	Ion_trans	e5kenA1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ion_trans	ECOD (v295.2)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
J, P [auth Q]	Fab C13C6	VH	Mus musculus (house mouse)	IGHV8-801, IGHJ401	V-DOMAIN VH	IG	FV-HEAVY_KAPPA	IMGT (202633-0)
I, O [auth P]	Fab C13C6	V-KAPPA	Mus musculus (house mouse)	IGKV6-1301, IGKJ501	V-DOMAIN V-KAPPA	IG	FV-HEAVY_KAPPA	IMGT (202633-0)
D, H, N [auth O]	Fab C4G7	V-KAPPA	Mus musculus (house mouse)	IGKV12-4401, IGKJ401	V-DOMAIN V-KAPPA	IG	FV-HEAVY_KAPPA	IMGT (202633-0)
C, G, M [auth N]	Fab C4G7	VH	Mus musculus (house mouse)	IGHV1-4201, IGHJ301	V-DOMAIN VH	IG	FV-HEAVY_KAPPA	IMGT (202633-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
J, P [auth Q]	Heavy Chain	IGHV8	-	ebola surface glycoprotein, gp1	SAbDab (2026-08-28)
I, O [auth P]	Light Chain	IGKV6	Kappa	ebola surface glycoprotein, gp1	SAbDab (2026-08-28)
D, H, N [auth O]	Light Chain	IGKV12	Kappa	ebola surface glycoprotein, gp2	SAbDab (2026-08-28)
C, G, M [auth N]	Heavy Chain	IGHV1	-	ebola surface glycoprotein, gp2	SAbDab (2026-08-28)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

Chain	Name	Target	Provenance Source
J, P [auth Q]	Cosfroviximab	Zaire Ebolavirus Glycoprotein	Therapeutic SAbDab (2026-08-28)
I, O [auth P]	Cosfroviximab	Zaire Ebolavirus Glycoprotein	Therapeutic SAbDab (2026-08-28)
D, H, N [auth O]	Larcaviximab	Zaire Ebolavirus Glycoprotein	Therapeutic SAbDab (2026-08-28)
C, G, M [auth N]	Larcaviximab	Zaire Ebolavirus Glycoprotein	Therapeutic SAbDab (2026-08-28)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, F, L [auth M]	PF22307	Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2)	Envelope glycoprotein GP2-like, HR1-HR2	This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ...	This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel orientation). This domain may have been acquired via horizontal transfer from retroviruses.	Domain
A, E, K	PF01611	Filovirus glycoprotein (Filo_glycop)	Filovirus glycoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J, P [auth Q]	c13C6 variable Fab domain heavy chain	-	-	-
I, O [auth P]	c13C6 variable Fab domain light chain	-	-	-
D, H, N [auth O]	c4G7 variable Fab domain light chain	-	-	-
C, G, M [auth N]	c4G7 variable Fab domain heavy chain	-	-	-
B, F, L [auth M]	Ebola surface glycoprotein, GP2	binding lipid binding identical protein binding protein binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont-mediated perturbation of host defense response viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism symbiont entry into host cell symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization clathrin-dependent endocytosis cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell disruption of cell in another organism disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host intracellular region virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host intracellular region viral membrane viral envelope membrane microdomain membrane raft membrane host cell plasma membrane host cell membrane
A, E, K	Ebola surface glycoprotein, GP1	binding lipid binding identical protein binding protein binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont-mediated perturbation of host defense response viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism symbiont entry into host cell symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization clathrin-dependent endocytosis cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell disruption of cell in another organism disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host intracellular region virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host intracellular region viral membrane viral envelope membrane microdomain membrane raft membrane host cell plasma membrane host cell membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, F, L [auth M]	IPR014625	Filoviruses glycoprotein	Family
B, F, L [auth M]	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain
B, F, L [auth M]	IPR054584	Envelope glycoprotein GP2-like, HR1-HR2	Domain
A, E, K	IPR014625	Filoviruses glycoprotein	Family
A, E, K	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain
A, E, K	IPR054584	Envelope glycoprotein GP2-like, HR1-HR2	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.