5KBP
The crystal structure of an alpha-mannosidase from Enterococcus faecalis V583
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_38C_like | e5kbpA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_38C_like | ECOD (1.6) |
A | AMS1_1st | e5kbpA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: AMS1_1st | ECOD (1.6) |
A | Glyco_hydro_38C_1st | e5kbpA5 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glyco_hydro_38C_1st | ECOD (1.6) |
A | Alpha-mann_mid | e5kbpA2 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Families 57/38 glycoside transferase middle domain (From Topology) | T: Families 57/38 glycoside transferase middle domain | F: Alpha-mann_mid | ECOD (1.6) |
A | Glyco_hydro_38 | e5kbpA4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: Glyco_hydro_38 | ECOD (1.6) |
B | Glyco_hydro_38C_like | e5kbpB2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_38C_like | ECOD (1.6) |
B | AMS1_1st | e5kbpB4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: AMS1_1st | ECOD (1.6) |
B | Glyco_hydro_38C_1st | e5kbpB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glyco_hydro_38C_1st | ECOD (1.6) |
B | Alpha-mann_mid | e5kbpB3 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Families 57/38 glycoside transferase middle domain (From Topology) | T: Families 57/38 glycoside transferase middle domain | F: Alpha-mann_mid | ECOD (1.6) |
B | Glyco_hydro_38 | e5kbpB5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: Glyco_hydro_38 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.110.10 | Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain | CATH (4.3.0) |
A | 1.20.1270.50 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 2.60.40.2210 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.70.98.30 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 2.60.40.2220 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 3.20.110.10 | Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain | CATH (4.3.0) |
B | 1.20.1270.50 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 2.60.40.2210 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.70.98.30 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
B | 2.60.40.2220 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01074 | Glycosyl hydrolases family 38 N-terminal domain (Glyco_hydro_38N) | Glycosyl hydrolases family 38 N-terminal domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. | Domain | |
PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain (Glyco_hydro38C2) | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | This domain is found at the C-terminal end of various glycosyl hydrolases belonging to family 38. The domain has a beta sandwich fold. | Domain | |
PF09261 | Alpha mannosidase middle domain (Alpha-mann_mid) | Alpha mannosidase middle domain | Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase [1]. | Domain | |
PF07748 | Glycosyl hydrolases family 38 C-terminal domain (Glyco_hydro_38C) | Glycosyl hydrolases family 38 C-terminal domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. | Domain | |
PF18438 | Glycosyl hydrolases family 38 C-terminal domain 1 (Glyco_hydro_38) | Glycosyl hydrolases family 38 C-terminal domain 1 | The enzymatic hydrolysis of alpha-mannosides is catalyzed by glycoside hydrolases (GH), termed alpha-mannosidases. Streptococcal (Sp) GH38 alpha-mannosidase active on N-glycans and possibly O-glycans. SpGH38 structure can be considered as five domain ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Glycosyl hydrolase, family 38 | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028995 | Glycoside hydrolase families 57/38, central domain superfamily | Homologous Superfamily | |
IPR015341 | Glycoside hydrolase family 38, central domain | Domain | |
IPR041147 | Glycosyl hydrolases family 38, C-terminal beta sandwich domain | Domain | |
IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Homologous Superfamily | |
IPR041509 | Glycosyl hydrolases 38, beta-1 domain | Domain | |
IPR011682 | Glycosyl hydrolase family 38, C-terminal | Domain | |
IPR000602 | Glycoside hydrolase family 38, N-terminal domain | Domain | |
IPR027291 | Glycoside hydrolase 38, N-terminal domain superfamily | Homologous Superfamily | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily | |
IPR037094 | Glycoside hydrolase family 38, central domain superfamily | Homologous Superfamily |