5K83
Crystal Structure of a Primate APOBEC3G N-Domain, in Complex with ssDNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
G [auth B] | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
H [auth A] | SCOP2B Superfamily | Cytidine deaminase-like | 8105528 | 3001838 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | APOBEC_N | e5k83D1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
E | APOBEC_N | e5k83E1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
B [auth C] | APOBEC_N | e5k83C1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
D [auth F] | APOBEC_N | e5k83F1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
G [auth B] | APOBEC_N | e5k83B1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
H [auth A] | APOBEC_N | e5k83A1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18782 | Novel AID APOBEC clade 2 (NAD2) | Novel AID APOBEC clade 2 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050610 | APOBEC Cytidine Deaminase | Family | |
IPR016193 | Cytidine deaminase-like | Homologous Superfamily | |
IPR002125 | Cytidine and deoxycytidylate deaminase domain | Domain | |
IPR016192 | APOBEC/CMP deaminase, zinc-binding | Binding Site |