5JQP
Crystal structure of ER glucosidase II heterodimeric complex consisting of catalytic subunit and the binding domain of regulatory subunit
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Glucosidase II beta subunit-like | 8048253 | 4006028 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EGF/Laminin-like | 8106406 | 3000412 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | EGF/Laminin-like | 8106405 | 3000412 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8090443 | 3000313 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8090445 | 3001528 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Galactose mutarotase-like | 8090441 | 3000035 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | YicI C-terminal domain-like | 8090439 | 3000267 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PRKCSH-like | e5jqpB1 | A: few secondary structure elements | X: EGF-like | H: LDL receptor-like module (From Topology) | T: LDL receptor-like module | F: PRKCSH-like | ECOD (1.6) |
A | Glyco_hydro_31_C | e5jqpA4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_31_C | ECOD (1.6) |
A | Gal_mutarotas_2 | e5jqpA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Gal_mutarotas_2 | ECOD (1.6) |
A | DUF5110_1 | e5jqpA3 | A: beta sandwiches | X: Putative glucosidase YicI, C-terminal domain (From Topology) | H: Putative glucosidase YicI, C-terminal domain (From Topology) | T: Putative glucosidase YicI, C-terminal domain | F: DUF5110_1 | ECOD (1.6) |
A | Glyco_hydro_31_N | e5jqpA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_31_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12999 | Glucosidase II beta subunit-like (PRKCSH-like) | Glucosidase II beta subunit-like | - | Family | |
PF21365 | Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd) | Glycosyl hydrolase family 31 C-terminal domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain. | Domain | |
PF13802 | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2) | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain | This entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold. | Domain | |
PF01055 | Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd) | Glycosyl hydrolases family 31 TIM-barrel domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold. | Domain | |
PF17137 | Domain of unknown function (DUF5110) (DUF5110) | Domain of unknown function (DUF5110) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Glucosidase 2 subunit beta-like protein | - | - | ||
Alpha glucosidase-like protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009011 | Mannose-6-phosphate receptor binding domain superfamily | Homologous Superfamily | |
IPR028146 | Glucosidase II beta subunit, N-terminal | Domain | |
IPR044865 | MRH domain | Domain | |
IPR036607 | Glucosidase 2 subunit beta-like | Domain | |
IPR039794 | Glucosidase II beta subunit-like | Family | |
IPR030458 | Glycosyl hydrolases family 31, active site | Active Site | |
IPR000322 | Glycoside hydrolase family 31, TIM barrel domain | Domain | |
IPR033403 | Domain of unknown function DUF5110 | Domain | |
IPR048395 | Glycosyl hydrolase family 31, C-terminal domain | Domain | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR025887 | Glycoside hydrolase family 31, N-terminal domain | Domain | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |