5J9K
Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG0275_1st | e5j9kA1 | A: alpha duplicates or obligate multimers | X: Lis-homology dimerization domain (From Topology) | H: Lis-homology dimerization domain (From Topology) | T: Lis-homology dimerization domain | F: KOG0275_1st | ECOD (1.6) |
A | KOG0275_2nd | e5j9kA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology) | T: Helical domain in TOPLESS related protein 2 (TPR2) | F: KOG0275_2nd | ECOD (1.6) |
A | zf_topless | e5j9kA3 | A: few secondary structure elements | X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology) | H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology) | T: Zinc finger domain in TOPLESS related protein 2 (TPR2) | F: zf_topless | ECOD (1.6) |
B | KOG0275_1st | e5j9kB3 | A: alpha duplicates or obligate multimers | X: Lis-homology dimerization domain (From Topology) | H: Lis-homology dimerization domain (From Topology) | T: Lis-homology dimerization domain | F: KOG0275_1st | ECOD (1.6) |
B | KOG0275_2nd | e5j9kB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology) | T: Helical domain in TOPLESS related protein 2 (TPR2) | F: KOG0275_2nd | ECOD (1.6) |
B | zf_topless | e5j9kB2 | A: few secondary structure elements | X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology) | H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology) | T: Zinc finger domain in TOPLESS related protein 2 (TPR2) | F: zf_topless | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21889 | TPR1-like, CTLH-containing domain (TPR1-like_2nd) | TPR1-like, CTLH-containing domain | This domain is found in Protein TPR1 from Oryza sativa, also known as Topless-related protein 2, and in similar sequences predominantly found in plants and some fungal species. TPR1 is thought to be a downstream regulator of strigolactones signalling ... | Domain | |
PF17814 | LisH-like dimerisation domain (LisH_TPL) | LisH-like dimerisation domain | TOPLESS (TPL) proteins have a highly conserved N-terminal domain containing a lissencephaly homologous (LisH) dimerization motif [1]. | Domain | |
PF21359 | TOPLESS, zinc finger domain (zf_topless) | TOPLESS, zinc finger domain | This is the zinc finger domain of TOPLESS and TOPLESS-related proteins, plant transcriptional co-repressors [1-3]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR006595 | CTLH, C-terminal LisH motif | Domain | |
IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily | Homologous Superfamily | |
IPR048419 | TOPLESS, zinc finger domain | Domain | |
IPR001680 | WD40 repeat | Repeat | |
IPR027728 | Topless family | Family | |
IPR006594 | LIS1 homology motif | Conserved Site | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR051650 | Strigolactone signaling regulator | Family | |
IPR036628 | Clp, N-terminal domain superfamily | Homologous Superfamily | |
IPR004176 | Clp, repeat (R) domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |