5J47
The X-ray structure of Inhibitor Bound to JCV Helicase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5j47a_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | automated matches | JCPyV (JC polyomavirus ) [TaxId: 10632 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Polyoma_lg_T_C | e5j47A1 | A: alpha arrays | X: N-terminal domain of large tumor antigen (From Topology) | H: N-terminal domain of large tumor antigen (From Topology) | T: N-terminal domain of large tumor antigen | F: Polyoma_lg_T_C | ECOD (1.6) |
A | Polyoma_lg_T_C | e5j47A3 | A: alpha complex topology | X: PriB N-terminal domain-like (From Topology) | H: PriB N-terminal domain-like (From Topology) | T: PriB N-terminal domain-like | F: Polyoma_lg_T_C | ECOD (1.6) |
A | Polyoma_lg_T_C | e5j47A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Polyoma_lg_T_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.510 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, large T-antigen D1 domain | CATH (4.3.0) |
A | 1.20.1050.70 | Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi) | Chain A, domain 2 | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06431 | Polyomavirus large T antigen C-terminus (Polyoma_lg_T_C) | Polyomavirus large T antigen C-terminus | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017910 | Zinc finger, large T-antigen D1-type | Domain | |
IPR003133 | T antigen, Ori-binding | Domain | |
IPR037102 | Zinc finger, large T-antigen D1 domain superfamily | Homologous Superfamily | |
IPR036869 | Chaperone J-domain superfamily | Homologous Superfamily | |
IPR014015 | Helicase, superfamily 3, DNA virus | Domain | |
IPR001623 | DnaJ domain | Domain | |
IPR016392 | Large T antigen, polyomaviridae | Family | |
IPR010932 | Large T antigen, polyomavirus, C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |