5J36
Crystal structure of 60-mer BFDV Capsid Protein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
A [auth E] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8091683 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | PF02443 | e5j36A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
A [auth E] | PF02443 | e5j36E1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
C [auth B] | PF02443 | e5j36B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
D [auth C] | PF02443 | e5j36C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
E [auth D] | PF02443 | e5j36D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF02443 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
A [auth E] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
C [auth B] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
D [auth C] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
E [auth D] | 2.60.120.950 | Mainly Beta | Sandwich | Jelly Rolls | Circovirus capsid protein | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D] | Beak and feather disease virus capsid protein | - |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D] | IPR038652 | Circovirus capsid superfamily | Homologous Superfamily |
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D] | IPR003383 | Circovirus capsid protein | Family |