5J0N
Lambda excision HJ intermediate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | lambda integrase clamp domain-like | 8091468 | 3000550 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8036952 | 3001127 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA-binding domain | 8035081 | 3000183 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8034409 | 3000426 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8034409 | 3000426 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8034410 | 3000426 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8034410 | 3000426 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Putative DNA-binding domain | 8038870 | 3000158 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Putative DNA-binding domain | 8038870 | 3000158 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Putative DNA-binding domain | 8038870 | 3000158 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | Phage_integrase_C | e5j0nE3 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
E | Phage_integrase_N_1 | e5j0nE2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
E | Phage_int_SAM_3 | e5j0nE1 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
F | Phage_integrase_C | e5j0nF4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
F | Phage_integrase_N_1 | e5j0nF3 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
F | Phage_int_SAM_3 | e5j0nF1 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
F | Arm-DNA-bind_1 | e5j0nF2 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
G | Phage_integrase_C | e5j0nG4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
G | Phage_integrase_N_1 | e5j0nG3 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
G | Phage_int_SAM_3 | e5j0nG2 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
G | Arm-DNA-bind_1 | e5j0nG1 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
H | Phage_integrase_C | e5j0nH4 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_C | ECOD (1.6) |
H | Phage_integrase_N_1 | e5j0nH2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N_1 | ECOD (1.6) |
H | Phage_int_SAM_3 | e5j0nH3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_3 | ECOD (1.6) |
H | Arm-DNA-bind_1 | e5j0nH1 | A: a+b two layers | X: DNA-binding domain | H: GCC-box binding domain-like (From Topology) | T: GCC-box binding domain-like | F: Arm-DNA-bind_1 | ECOD (1.6) |
I | Bac_DNA_binding | e5j0nI1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: Bac_DNA_binding | ECOD (1.6) |
K | Bac_DNA_binding | e5j0nK1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: Bac_DNA_binding | ECOD (1.6) |
J | Bac_DNA_binding | e5j0nJ1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: Bac_DNA_binding | ECOD (1.6) |
L | Bac_DNA_binding | e5j0nL1 | A: alpha arrays | X: HTH | H: IHF-like DNA-binding proteins (From Topology) | T: IHF-like DNA-binding proteins | F: Bac_DNA_binding | ECOD (1.6) |
M | Exc | e5j0nM1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: Exc | ECOD (1.6) |
N | Exc | e5j0nN1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: Exc | ECOD (1.6) |
O | Exc | e5j0nO1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: Exc | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09003 | Bacteriophage lambda integrase, Arm DNA-binding domain (Arm-DNA-bind_1) | Bacteriophage lambda integrase, Arm DNA-binding domain | The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA- ... | Domain | |
PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family | |
PF02899 | Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1) | Phage integrase, N-terminal SAM-like domain | - | Domain | |
PF00216 | Bacterial DNA-binding protein (Bac_DNA_binding) | Bacterial DNA-binding protein | - | Domain | |
PF00216 | Bacterial DNA-binding protein (Bac_DNA_binding) | Bacterial DNA-binding protein | - | Domain | |
PF07825 | Excisionase-like protein (Exc) | Excisionase-like protein | The phage-encoded excisionase protein (Xis, Swiss:P03699) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha ... | Domain |