5IV9
The LPS Transporter LptDE from Klebsiella pneumoniae, full-length
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | LptA-like | 8045264 | 4004381 | SCOP2 (2022-06-29) |
A | SCOP2 Family | LptD C-terminal domain-like | 8045952 | 4004780 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | OstA-like beta-folder | 8053500 | 3002196 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | LptD-like barrel | 8053498 | 3002195 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | TolB N-terminal domain-like | 8053482 | 3000482 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OstA_C | e5iv9A1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: OstA_C | ECOD (1.6) |
A | OstA | e5iv9A2 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: OstA | ECOD (1.6) |
B | LptE | e5iv9B1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: LptE | ECOD (1.6) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3005059 | LptD | LptD is involved in LPS transport in a ABC Transporter efflux system. It confers resistance to rifamycin, aminocoumarin, and peptide antibiotics. | CARD (3.3.0) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:0010001 | ATP-binding cassette (ABC) antibiotic efflux pump | carbapenem, peptide antibiotic, aminocoumarin antibiotic, rifamycin antibiotic | antibiotic efflux | CARD (3.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03968 | LptA/(LptD N-terminal domain) LPS transport protein (LptD_N) | LptA/(LptD N-terminal domain) LPS transport protein | This family of proteins are involved in lipopolysaccharide transport across the gram negative inner and outer membranes. The type examples for this family are E. coli LptA Swiss:P0ADV1 and the N-terminal domain of LptD Swiss:P31554. | Domain | |
PF04453 | LPS transport system D (LptD) | LPS transport system D | - | Family | |
PF04390 | Lipopolysaccharide-assembly (LptE) | Lipopolysaccharide-assembly | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007543 | LptD, C-terminal | Domain | |
IPR020889 | LPS-assembly protein LptD | Family | |
IPR050218 | Lipopolysaccharide Assembly Protein LptD | Family | |
IPR005653 | Organic solvent tolerance-like, N-terminal | Domain | |
IPR007485 | LPS-assembly lipoprotein LptE | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | LPS assembly protein family (n=26, S=30) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |