5IV8
The LPS Transporter LptDE from Klebsiella pneumoniae, core complex
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | LptD-like barrel | 8053498 | 3002195 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | LptD-like barrel | 8053498 | 3002195 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TolB N-terminal domain-like | 8053482 | 3000482 | SCOP2B (2022-06-29) |
D | SCOP2 Family | LptE-like | 8045855 | 4004725 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TolB N-terminal domain-like | 8053482 | 3000482 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OstA_C | e5iv8A1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: OstA_C | ECOD (1.6) |
C | OstA_C | e5iv8C1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: OstA_C | ECOD (1.6) |
B | LptE | e5iv8B1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: LptE | ECOD (1.6) |
D | LptE | e5iv8D1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: LptE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.160.150 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Lipoprotein like domain | CATH (4.3.0) |
D | 3.30.160.150 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Lipoprotein like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04453 | LPS transport system D (LptD) | LPS transport system D | - | Family | |
PF04390 | Lipopolysaccharide-assembly (LptE) | Lipopolysaccharide-assembly | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007543 | LptD, C-terminal | Domain | |
IPR020889 | LPS-assembly protein LptD | Family | |
IPR050218 | Lipopolysaccharide Assembly Protein LptD | Family | |
IPR005653 | Organic solvent tolerance-like, N-terminal | Domain | |
IPR007485 | LPS-assembly lipoprotein LptE | Family |