5IPK | pdb_00005ipk

Structure of the R432A variant of Adeno-associated virus type 2 VLP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	TGS	e5ipkz1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
Z	TGS	e5ipkZ1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
YA [auth y]	TGS	e5ipky1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
Y	TGS	e5ipkY1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
XA [auth x]	TGS	e5ipkx1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
X	TGS	e5ipkX1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
WA [auth w]	TGS	e5ipkw1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
W	TGS	e5ipkW1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
VA [auth v]	TGS	e5ipkv1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
V	TGS	e5ipkV1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
UA [auth u]	TGS	e5ipku1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
U	TGS	e5ipkU1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
TA [auth t]	TGS	e5ipkt1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
T	TGS	e5ipkT1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
SA [auth s]	TGS	e5ipks1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
S	TGS	e5ipkS1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
RA [auth r]	TGS	e5ipkr1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
R	TGS	e5ipkR1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
QA [auth q]	TGS	e5ipkq1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
Q	TGS	e5ipkQ1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
PA [auth p]	TGS	e5ipkp1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
P	TGS	e5ipkP1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
OA [auth o]	TGS	e5ipko1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
O	TGS	e5ipkO1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
NA [auth n]	TGS	e5ipkn1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
N	TGS	e5ipkN1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
MA [auth m]	TGS	e5ipkm1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
M	TGS	e5ipkM1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
LA [auth l]	TGS	e5ipkl1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
L	TGS	e5ipkL1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
KA [auth k]	TGS	e5ipkk1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
K	TGS	e5ipkK1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
JA [auth j]	TGS	e5ipkj1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
J	TGS	e5ipkJ1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
IA [auth i]	TGS	e5ipki1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
I	TGS	e5ipkI1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
HB [auth 8]	TGS	e5ipk81	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
HA [auth h]	TGS	e5ipkh1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
H	TGS	e5ipkH1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
GB [auth 7]	TGS	e5ipk71	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
GA [auth g]	TGS	e5ipkg1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
G	TGS	e5ipkG1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
FB [auth 6]	TGS	e5ipk61	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
FA [auth f]	TGS	e5ipkf1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
F	TGS	e5ipkF1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
EB [auth 5]	TGS	e5ipk51	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
EA [auth e]	TGS	e5ipke1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
E	TGS	e5ipkE1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
DB [auth 4]	TGS	e5ipk41	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
DA [auth d]	TGS	e5ipkd1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
D	TGS	e5ipkD1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
CB [auth 3]	TGS	e5ipk31	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
CA [auth c]	TGS	e5ipkc1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
C	TGS	e5ipkC1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
BB [auth 2]	TGS	e5ipk21	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
BA [auth b]	TGS	e5ipkb1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
B	TGS	e5ipkB1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
AB [auth 1]	TGS	e5ipk11	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
AA [auth a]	TGS	e5ipka1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)
A	TGS	e5ipkA1	A: beta barrels	X: Rossmann-like	H: RIFT-related	T: acid protease	F: TGS	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.