5IJN
Composite structure of the inner ring of the human nuclear pore complex (32 copies of Nup205)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
K | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
Q | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
W | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090969 | 3000456 | SCOP2B (2021-05-27) |
C | SCOP2 Family | Nup93/Nic96-like | 8045345 | 4004426 | SCOP2 (2021-05-27) |
C | SCOP2 Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2 (2021-05-27) |
I | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2021-05-27) |
O | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2021-05-27) |
U | SCOP2B Superfamily | Scaffolding nucleoporins | 8090313 | 3002255 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2021-05-27) |
M | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2021-05-27) |
S | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2021-05-27) |
Y | SCOP2B Superfamily | Nup58-like | 8053256 | 3002169 | SCOP2B (2021-05-27) |
H | SCOP2 Family | Nup62-like | 8046764 | 4005288 | SCOP2 (2021-05-27) |
H | SCOP2 Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2 (2021-05-27) |
N | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2021-05-27) |
T | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2021-05-27) |
Z | SCOP2B Superfamily | Nup62-like | 8053268 | 3002170 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08801 | e5ijnA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
A | PF03177 | e5ijnA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
B | PF08801 | e5ijnB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
B | PF03177 | e5ijnB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
E | PF08801 | e5ijnE2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
E | PF03177 | e5ijnE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
K | PF08801 | e5ijnK1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
K | PF03177 | e5ijnK2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
Q | PF08801 | e5ijnQ1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
Q | PF03177 | e5ijnQ2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
W | PF08801 | e5ijnW1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF08801 | ECOD (1.6) |
W | PF03177 | e5ijnW2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: PF03177 | ECOD (1.6) |
C | PF04097 | e5ijnC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04097 | ECOD (1.6) |
I | PF04097 | e5ijnI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04097 | ECOD (1.6) |
O | PF04097 | e5ijnO1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04097 | ECOD (1.6) |
U | PF04097 | e5ijnU1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04097 | ECOD (1.6) |
D | PF11894 | e5ijnD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
J | PF11894 | e5ijnJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
P | PF11894 | e5ijnP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
V | PF11894 | e5ijnV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11894 | ECOD (1.6) |
F | F_UNCLASSIFIED | e5ijnF1 | A: a+b two layers | X: Alpha-beta plaits | H: Nup54 ferredoxin-like domain (From Topology) | T: Nup54 ferredoxin-like domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF18437 | e5ijnF2 | A: extended segments | X: Nup54 C-terminal interacting domain (From Topology) | H: Nup54 C-terminal interacting domain (From Topology) | T: Nup54 C-terminal interacting domain | F: PF18437 | ECOD (1.6) |
G | PF15967 | e5ijnG1 | A: alpha bundles | X: Nucleoporin p58/p45 helical region (From Topology) | H: Nucleoporin p58/p45 helical region (From Topology) | T: Nucleoporin p58/p45 helical region | F: PF15967 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03177 | Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C) | Non-repetitive/WGA-negative nucleoporin C-terminal | - | Repeat | |
PF08801 | Nup133 N terminal like (Nucleoporin_N) | Nup133 N terminal like | - | Repeat | |
PF04097 | Nup93/Nic96 (Nic96) | Nup93/Nic96 | - | Repeat | |
PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192) | Nuclear pore complex scaffold, nucleoporins 186/192/205 | - | Repeat | |
PF18437 | Nup54 C-terminal interacting domain (Nup54_C) | Nup54 C-terminal interacting domain | The mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-he ... | Domain | |
PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042537 | Nucleoporin, Nup155-like, C-terminal, subdomain 2 | Homologous Superfamily | |
IPR042533 | Nucleoporin, Nup155-like, C-terminal, subdomain 1 | Homologous Superfamily | |
IPR042538 | Nucleoporin, Nup155-like, C-terminal, subdomain 3 | Homologous Superfamily | |
IPR014908 | Nucleoporin, Nup133/Nup155-like, N-terminal | Domain | |
IPR004870 | Nucleoporin, Nup155-like | Family | |
IPR007231 | Nucleoporin interacting component Nup93/Nic96 | Family | |
IPR021827 | Nucleoporin Nup186/Nup192/Nup205 | Family | |
IPR040985 | Nup54, C-terminal interacting domain | Domain | |
IPR024864 | Nucleoporin Nup54/Nup57/Nup44 | Family | |
IPR025712 | Nucleoporin Nup54, alpha-helical domain | Domain | |
IPR024882 | Nucleoporin p58/p45/NUP49 | Family | |
IPR007758 | Nucleoporin, NSP1-like, C-terminal | Domain | |
IPR026010 | Nucleoporin NSP1/NUP62 | Family |