5I2M
CRYSTAL STRUCTURE OF VSV-INDIANA (MUDD-SUMMERS STRAIN) GLYCOPROTEIN UNDER ITS ACIDIC CONFORMATION
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5i2ma_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | Spike glycoprotein-like | Spike glycoprotein | (Vesicular stomatitis Indiana virus strain Mudd-Summers ) [TaxId: 11279 ], | SCOPe (2.08) |
B | d5i2mb_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | Spike glycoprotein-like | Spike glycoprotein | (Vesicular stomatitis Indiana virus strain Mudd-Summers ) [TaxId: 11279 ], | SCOPe (2.08) |
C | d5i2mc_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | Spike glycoprotein-like | Spike glycoprotein | (Vesicular stomatitis Indiana virus strain Mudd-Summers ) [TaxId: 11279 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Spike glycoprotein-like | 8021307 | 4002625 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Viral glycoprotein ectodomain-like | 8033687 | 3001498 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8033687 | 3001498 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Viral glycoprotein ectodomain-like | 8033687 | 3001498 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rhabdo_glycop_1st | e5i2mA1 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Rhabdo_glycop_1st | ECOD (1.6) |
A | Rhabdo_glycop_2nd | e5i2mA2 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Rhabdo_glycop_2nd | ECOD (1.6) |
A | Rhabdo_glycop_3rd | e5i2mA3 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Rhabdo_glycop_3rd | ECOD (1.6) |
B | Rhabdo_glycop_1st | e5i2mB1 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Rhabdo_glycop_1st | ECOD (1.6) |
B | Rhabdo_glycop_2nd | e5i2mB3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Rhabdo_glycop_2nd | ECOD (1.6) |
B | Rhabdo_glycop_3rd | e5i2mB2 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Rhabdo_glycop_3rd | ECOD (1.6) |
C | Rhabdo_glycop_1st | e5i2mC2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Rhabdo_glycop_1st | ECOD (1.6) |
C | Rhabdo_glycop_2nd | e5i2mC1 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Rhabdo_glycop_2nd | ECOD (1.6) |
C | Rhabdo_glycop_3rd | e5i2mC3 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Rhabdo_glycop_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.640 | Mainly Beta | Roll | SH3 type barrels. | Rhabdovirus spike glycoprotein G, lateral domain | CATH (4.3.0) |
A | 6.10.140.740 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
A | 2.30.29.130 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
B | 2.30.30.640 | Mainly Beta | Roll | SH3 type barrels. | Rhabdovirus spike glycoprotein G, lateral domain | CATH (4.3.0) |
B | 6.10.140.740 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 2.30.29.130 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
C | 2.30.30.640 | Mainly Beta | Roll | SH3 type barrels. | Rhabdovirus spike glycoprotein G, lateral domain | CATH (4.3.0) |
C | 6.10.140.740 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
C | 2.30.29.130 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00974 | Rhabdovirus spike glycoprotein (Rhabdo_glycop) | Rhabdovirus spike glycoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001903 | Rhabdovirus glycoprotein | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Rhabdovirus spike glycoprotein |