Crystal structure of the 3C protease from South African Territories type 2 foot-and-mouth disease virus
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2 Family | Viral cysteine protease of trypsin fold (3C/2A)Pro-like | 8071552 | 4007776 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Trypsin-like serine proteases | 8071553 | 3000114 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Trypsin-like serine proteases | 8071553 | 3000114 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Trypsin-like serine proteases | 8071553 | 3000114 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Trypsin-like serine proteases | 8071553 | 3000114 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Trypsin-like serine proteases | 8071553 | 3000114 | SCOP2B (2021-05-27) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF00548 | e5hm2A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00548 | ECOD (1.6) |
B | PF00548 | e5hm2B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00548 | ECOD (1.6) |
C | PF00548 | e5hm2C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00548 | ECOD (1.6) |
D | PF00548 | e5hm2D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00548 | ECOD (1.6) |
E | PF00548 | e5hm2E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: PF00548 | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| 3C proteinase | | | |
Chains | Accession | Name | Type |
---|
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily |
| IPR004004 | Helicase/polymerase/peptidase polyprotein, Calicivirus-type | Family |
| IPR001205 | RNA-directed RNA polymerase, C-terminal domain | Domain |
| IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
| IPR044067 | Picornavirales 3C/3C-like protease domain | Domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily |
| IPR000199 | Peptidase C3A/C3B, picornaviral | Domain |
| IPR014759 | Helicase, superfamily 3, single-stranded RNA virus | Domain |
| IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |
| IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain |
| IPR000605 | Helicase, superfamily 3, single-stranded DNA/RNA virus | Domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |