Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyL30e-like 8063950 3001739 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyL30e-like 8063950 3001739 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyL30e-like 8063950 3001739 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063660 3000118 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063660 3000118 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063660 3000118 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ANop_Ce5ginA3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: Nop_CECOD (1.6)
ANop_Ne5ginA2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: Nop_NECOD (1.6)
APRK14552e5ginA1 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PRK14552ECOD (1.6)
D [auth B]Nop_Ce5ginB2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: Nop_CECOD (1.6)
D [auth B]Nop_Ne5ginB3 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: Nop_NECOD (1.6)
D [auth B]PRK14552e5ginB1 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PRK14552ECOD (1.6)
M [auth K]Nop_Ce5ginK3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: Nop_CECOD (1.6)
M [auth K]Nop_Ne5ginK2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: Nop_NECOD (1.6)
M [auth K]PRK14552e5ginK1 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PRK14552ECOD (1.6)
B [auth C]Ribosomal_L7Ae_1e5ginC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
E [auth D]Ribosomal_L7Ae_1e5ginD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
N [auth L]Ribosomal_L7Ae_1e5ginL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
C [auth E]Fibrillarine5ginE1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
FFibrillarine5ginF1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
O [auth M]Fibrillarine5ginM1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.420.220 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
A1.10.287.4070 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
A1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
D [auth B]3.30.420.220 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
D [auth B]1.10.287.4070 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
D [auth B]1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
M [auth K]3.30.420.220 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
M [auth K]1.10.287.4070 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
M [auth K]1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
B [auth C]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
E [auth D]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
N [auth L]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
C [auth E]3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
C [auth E]3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
F3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
F3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
O [auth M]3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
O [auth M]3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B],
M [auth K]
PF21572Archaeal Nop5/56-rel, N-terminal domain (Nop5_56-rel_N_Arc)Archaeal Nop5/56-rel, N-terminal domainThis domain is found at the N-terminal end of a group of archaeal proteins, including Uncharacterized NOP5 family protein MJ0694 from Methanocaldococcus jannaschii. This domain interacts with fibrillarin, the other subunit of a complex that is critic ...This domain is found at the N-terminal end of a group of archaeal proteins, including Uncharacterized NOP5 family protein MJ0694 from Methanocaldococcus jannaschii. This domain interacts with fibrillarin, the other subunit of a complex that is critical to modify and process ribosomal RNAs [1-5]. This domain shows a highly conserved folded structure despite low sequence similarity among homologs. It shows four beta-sheets surrounded by four alpha- helices [6] and is found associated with Pfam:PF01798.
Domain
A,
D [auth B],
M [auth K]
PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
B [auth C],
E [auth D],
N [auth L]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
C [auth E],
F,
O [auth M]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B],
M [auth K]
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit -
B [auth C],
E [auth D],
N [auth L]
50S ribosomal protein L7Ae
C [auth E],
F,
O [auth M]
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
G,
H,
K [auth N]
C/D RNA---
I,
J,
L [auth O]
substrate---