Annotations: 5FVM

Cryo electron microscopy of a complex of Tor and Lst8

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	WD40, Beta-prop_NOL10_N	e5fvmD1	A: alpha arrays	X: P-loop domains-like	H: Cas7-related	T: CRISPR-associated protein Cas7f/Csy3	F: WD40, Beta-prop_NOL10_N	ECOD (v295.2)
C	WD40, Beta-prop_NOL10_N	e5fvmC1	A: alpha arrays	X: P-loop domains-like	H: Cas7-related	T: CRISPR-associated protein Cas7f/Csy3	F: WD40, Beta-prop_NOL10_N	ECOD (v295.2)
B	SNF2-rel_dom	e5fvmB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SNF2-rel_dom	ECOD (v295.2)
A	FRB_dom	e5fvmA1	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
A	HAT_PRP39_N, HAT_PRP39_C	e5fvmA4	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: HAT_PRP39_N, HAT_PRP39_C	ECOD (v295.2)
A	Sod_Fe_C	e5fvmA5	A: alpha arrays	X: Cytochrome P450	H: Cytochrome P450	T: Cytochrome P450	F: Sod_Fe_C	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	TARGET OF RAPAMYCIN COMPLEX SUBUNIT LST8	-	cellular response to stimulus TOR signaling regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process cellular response to stimulus TOR signaling regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle bounding membrane of organelle organelle membrane organelle membrane protein-containing complex TORC1 complex TOR complex intracellular protein-containing complex TORC2 complex
A, B	SERINE/THREONINE-PROTEIN KINASE TOR2	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein-containing complex binding binding	snRNA modification regulation of cellular process RNA metabolic process regulation of snRNA pseudouridine synthesis regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA metabolic process snRNA metabolic process snRNA processing RNA processing regulation of nucleobase-containing compound metabolic process pseudouridine synthesis snRNA modification regulation of cellular process RNA metabolic process regulation of snRNA pseudouridine synthesis regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA metabolic process snRNA metabolic process snRNA processing RNA processing regulation of nucleobase-containing compound metabolic process pseudouridine synthesis regulation of biological process snRNA pseudouridine synthesis biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA modification biosynthetic process macromolecule modification metabolic process cellular process macromolecule metabolic process regulation of metabolic process cellular response to stimulus response to nutrient levels cellular response to nitrogen levels response to stimulus cellular response to starvation cellular response to nutrient levels cellular response to stress cellular response to nitrogen starvation response to stress response to starvation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular component organization or biogenesis TOR signaling signaling intracellular signal transduction cell communication signal transduction TORC1 signaling negative regulation of catabolic process catabolic process macroautophagy negative regulation of metabolic process autophagy negative regulation of biological process regulation of catabolic process regulation of autophagy negative regulation of macroautophagy regulation of macroautophagy negative regulation of autophagy negative regulation of cellular process process utilizing autophagic mechanism	cell periphery cellular anatomical structure plasma membrane membrane TORC2 complex protein-containing complex TOR complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure lytic vacuole vacuole cell periphery cellular anatomical structure plasma membrane membrane TORC2 complex protein-containing complex TOR complex intracellular protein-containing complex vacuolar membrane membrane-bounded organelle storage vacuole intracellular anatomical structure lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle cytoplasm organelle membrane fungal-type vacuole membrane TORC1 complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
C, D	IPR001680	WD40 repeat	Repeat
C, D	IPR037588	Target of rapamycin complex subunit LST8	Family
C, D	IPR019775	WD40 repeat, conserved site	Conserved Site
C, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B	IPR026683	Serine/threonine-protein kinase TOR, catalytic domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR003152	FATC domain	Domain
A, B	IPR024585	Serine/threonine-protein kinase mTOR domain	Domain
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR009076	FKBP12-rapamycin binding domain	Domain
A, B	IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	Domain
A, B	IPR050517	DNA Damage Response and Repair Kinase	Family
A, B	IPR003151	PIK-related kinase, FAT	Domain
A, B	IPR018936	Phosphatidylinositol 3-/4-kinase, conserved site	Conserved Site
A, B	IPR036940	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Homologous Superfamily
A, B	IPR057564	Serine/threonine-protein kinase ATR-like, HEAT repeats	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR036738	FKBP12-rapamycin binding domain superfamily	Homologous Superfamily
A, B	IPR014009	PIK-related kinase, FAT domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5FVM | pdb_00005fvm

Cryo electron microscopy of a complex of Tor and Lst8

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage