5FQ6
Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e5fq6B2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF07715 | e5fq6B1 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
D | F_UNCLASSIFIED | e5fq6D2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF07715 | e5fq6D1 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
I | F_UNCLASSIFIED | e5fq6I1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: F_UNCLASSIFIED | ECOD (1.6) |
I | PF07715 | e5fq6I2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
M | F_UNCLASSIFIED | e5fq6M2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: F_UNCLASSIFIED | ECOD (1.6) |
M | PF07715 | e5fq6M1 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
A | PF12771 | e5fq6A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12771 | ECOD (1.6) |
C | PF12771 | e5fq6C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12771 | ECOD (1.6) |
H | PF12771 | e5fq6H1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12771 | ECOD (1.6) |
L | PF12771 | e5fq6L1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12771 | ECOD (1.6) |
E | PF12888 | e5fq6E1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Putative lipid binding protein BT_2261 (From Topology) | T: Putative lipid binding protein BT_2261 | F: PF12888 | ECOD (1.6) |
F | PF12888 | e5fq6F1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Putative lipid binding protein BT_2261 (From Topology) | T: Putative lipid binding protein BT_2261 | F: PF12888 | ECOD (1.6) |
J | PF12888 | e5fq6J1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Putative lipid binding protein BT_2261 (From Topology) | T: Putative lipid binding protein BT_2261 | F: PF12888 | ECOD (1.6) |
N | PF12888 | e5fq6N1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Putative lipid binding protein BT_2261 (From Topology) | T: Putative lipid binding protein BT_2261 | F: PF12888 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
H | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
L | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
E | 2.40.128.220 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
F | 2.40.128.220 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
J | 2.40.128.220 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) | |
N | 2.40.128.220 | Mainly Beta | Beta Barrel | Lipocalin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
SUSC/RAGA FAMILY TONB-LINKED OUTER MEMBRANE PROTEIN | - | |||
PUTATIVE LIPOPROTEIN | - | - | ||
UNCHARACTERIZED PROTEIN | - | - | - | |
BT_2261 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039426 | TonB-dependent receptor-like | Family | |
IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily | |
IPR023997 | TonB-dependent outer membrane protein SusC/RagA, conserved site | Conserved Site | |
IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily | |
IPR023996 | TonB-dependent outer membrane protein, SusC/RagA | Family | |
IPR012910 | TonB-dependent receptor, plug domain | Domain | |
IPR041662 | SusD-like 2 | Family | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR024404 | Lipid-binding, putative | Family | |
IPR038668 | Lipid-binding superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Ligand-gated protein channels (n=22,S=24) | Outer Membrane Receptor (OMR) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Polysaccharide Utilization Proteins | SusCD complex BT2261-2264, space group P1 |