5FLV
Crystal structure of NKX2-5 and TBX5 bound to the Nppa promoter region
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | p53-like transcription factors | 8062619 | 3000758 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Homeodomain-like | 8071004 | 3000001 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2 Family | T-box | 8062618 | 4001850 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2 Superfamily | p53-like transcription factors | 8062619 | 3000758 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Homeodomain-like | 8071004 | 3000001 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Homeodomain-like | 8071004 | 3000001 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | p53-like transcription factors | 8062619 | 3000758 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2 Family | Homeodomain | 8071003 | 4000291 | SCOP2 (2022-06-29) |
J [auth M] | SCOP2 Superfamily | Homeodomain-like | 8071004 | 3000001 | SCOP2 (2022-06-29) |
J [auth M] | SCOP2B Superfamily | p53-like transcription factors | 8062619 | 3000758 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | T-box | e5flvA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
A | Homeobox | e5flvA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Homeobox | ECOD (1.6) |
D [auth E] | T-box | e5flvE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
D [auth E] | Homeobox | e5flvE2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Homeobox | ECOD (1.6) |
G [auth I] | T-box | e5flvI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
G [auth I] | Homeobox | e5flvI2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Homeobox | ECOD (1.6) |
J [auth M] | T-box | e5flvM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: T-box | ECOD (1.6) |
J [auth M] | Homeobox | e5flvM2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Homeobox | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
A | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
D [auth E] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
D [auth E] | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
G [auth I] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
G [auth I] | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
J [auth M] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
J [auth M] | 2.60.40.820 | Mainly Beta | Sandwich | Immunoglobulin-like | Transcription factor, T-box | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth E], G [auth I], J [auth M] | PF00907 | T-box (T-box) | T-box | The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth E], G [auth I], J [auth M] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
A, D [auth E], G [auth I], J [auth M] | IPR020479 | Homeodomain, metazoa | Domain |
A, D [auth E], G [auth I], J [auth M] | IPR001356 | Homeodomain | Domain |
A, D [auth E], G [auth I], J [auth M] | IPR050394 | Homeobox NK-like transcription regulators | Family |
A, D [auth E], G [auth I], J [auth M] | IPR017970 | Homeobox, conserved site | Conserved Site |
A, D [auth E], G [auth I], J [auth M] | IPR001699 | T-box transcription factor | Family |
A, D [auth E], G [auth I], J [auth M] | IPR036960 | T-box superfamily | Homologous Superfamily |
A, D [auth E], G [auth I], J [auth M] | IPR046360 | T-box transcription factor, DNA-binding domain | Domain |
A, D [auth E], G [auth I], J [auth M] | IPR018186 | Transcription factor, T-box, conserved site | Conserved Site |
A, D [auth E], G [auth I], J [auth M] | IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily |