5FJQ

Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in Cellvibrio japonicus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5fjqa_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)
B	d5fjqb_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)
C	d5fjqc_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Cellvibrio japonicus ) [TaxId: 155077 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	E-set domains of sugar-utilizing enzymes	8067741	4007565	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8067742	3000070	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	E set domains	8067742	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	E set domains	8067742	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LPMO_10	e5fjqA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: LPMO_10	ECOD (1.6)
B	LPMO_10	e5fjqB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: LPMO_10	ECOD (1.6)
C	LPMO_10	e5fjqC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: LPMO_10	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.50.50	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)
B	2.70.50.50	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)
C	2.70.50.50	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03067	Lytic polysaccharide mono-oxygenase, cellulose-degrading (LPMO_10)	Lytic polysaccharide mono-oxygenase, cellulose-degrading	This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase [2], degrading cellulose. T ...	This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase [2], degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	CARBOHYDRATE BINDING PROTEIN, PUTATIVE, CPB33A	binding carbohydrate binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR004302	Cellulose/chitin-binding protein, N-terminal	Domain
A, B, C	IPR051024	GlcNAc and Chitin Interaction and Degradation	Family
A, B, C	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C	IPR003610	Carbohydrate binding module family 5/12	Domain
A, B, C	IPR036573	Carbohydrate-binding module superfamily 5/12	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.