5F84
Crystal structure of Drosophila Poglut1 (Rumi) complexed with its glycoprotein product (glucosylated EGF repeat) and UDP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5f84b1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | EGF/Laminin | EGF-type module | Factor IX (IXa) | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5f84b2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | EGF/Laminin-like | 8038255 | 3000412 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05686 | e5f84A1 | A: a/b three-layered sandwiches | X: O-glucosyltransferase rumi N-terminal domain (From Topology) | H: O-glucosyltransferase rumi N-terminal domain (From Topology) | T: O-glucosyltransferase rumi N-terminal domain | F: PF05686 | ECOD (1.6) |
A | PF05686 | e5f84A2 | A: a/b three-layered sandwiches | X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | T: UDP-Glycosyltransferase/glycogen phosphorylase | F: PF05686 | ECOD (1.6) |
B | PF00008 | e5f84B1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: PF00008 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05686 | Glycosyl transferase family 90 (Glyco_transf_90) | Glycosyl transferase family 90 | - | Family | |
PF00008 | EGF-like domain (EGF) | EGF-like domain | There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006598 | Glycosyl transferase CAP10 domain | Domain | |
IPR000294 | Gamma-carboxyglutamic acid-rich (GLA) domain | Domain | |
IPR018097 | EGF-like calcium-binding, conserved site | Conserved Site | |
IPR000742 | EGF-like domain | Domain | |
IPR018114 | Serine proteases, trypsin family, histidine active site | Active Site | |
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR017857 | Coagulation factor-like, Gla domain superfamily | Homologous Superfamily | |
IPR001314 | Peptidase S1A, chymotrypsin family | Family | |
IPR033116 | Serine proteases, trypsin family, serine active site | Active Site | |
IPR001254 | Serine proteases, trypsin domain | Domain | |
IPR035972 | Gamma-carboxyglutamic acid-rich (GLA) domain superfamily | Homologous Superfamily | |
IPR001881 | EGF-like calcium-binding domain | Domain | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily | |
IPR000152 | EGF-type aspartate/asparagine hydroxylation site | PTM | |
IPR012224 | Peptidase S1A, coagulation factor VII/IX/X/C/Z | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P00740 | :