5F0J
Structure of retromer VPS26-VPS35 subunits bound to SNX3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Vps35 | e5f0jA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
B | Vps26_C | e5f0jB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_C | ECOD (1.6) |
B | Vps26_N | e5f0jB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_N | ECOD (1.6) |
C | PX | e5f0jC1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.40.640 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 3.30.1520.10 | Alpha Beta | 2-Layer Sandwich | PX Domain | Phox-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03635 | Vacuolar protein sorting-associated protein 35 (Vps35) | Vacuolar protein sorting-associated protein 35 | - | Repeat | |
PF03643 | Vacuolar protein sorting-associated protein 26 (Vps26) | Vacuolar protein sorting-associated protein 26 | - | Family | |
PF00787 | PX domain (PX) | PX domain | PX domains bind to phosphoinositides. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR005378 | Vacuolar protein sorting-associated protein 35 | Family | |
IPR042491 | Vacuolar protein sorting-associated protein 35, C-terminal | Homologous Superfamily | |
IPR028934 | Vacuolar protein sorting protein 26 related | Family | |
IPR014752 | Arrestin-like, C-terminal | Homologous Superfamily | |
IPR001683 | Phox homology | Domain | |
IPR042137 | Vertebrate SNX3, PX domain | Domain | |
IPR036871 | PX domain superfamily | Homologous Superfamily | |
IPR051074 | Sorting Nexin | Family |