Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyZinc finger domain of DNA polymerase-alpha 8032318 3001751 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyZinc finger domain of DNA polymerase-alpha 8032318 3001751 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMetallo-dependent phosphatases 8053379 3001067 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNucleic acid-binding proteins 8053380 3000135 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyMetallo-dependent phosphatases 8053379 3001067 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNucleic acid-binding proteins 8053380 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG2851_1e5exrA2 A: alpha arraysX: Insert all-alpha domain in prim-pol (From Topology)H: Insert all-alpha domain in prim-pol (From Topology)T: Insert all-alpha domain in prim-polF: KOG2851_1ECOD (1.6)
ADNA_primase_Se5exrA1 A: a+b complex topologyX: Prim-pol domain (From Topology)H: Prim-pol domain (From Topology)T: Prim-pol domainF: DNA_primase_SECOD (1.6)
EKOG2851_1e5exrE1 A: alpha arraysX: Insert all-alpha domain in prim-pol (From Topology)H: Insert all-alpha domain in prim-pol (From Topology)T: Insert all-alpha domain in prim-polF: KOG2851_1ECOD (1.6)
EDNA_primase_Se5exrE2 A: a+b complex topologyX: Prim-pol domain (From Topology)H: Prim-pol domain (From Topology)T: Prim-pol domainF: DNA_primase_SECOD (1.6)
BDNA_primase_lrg_Ce5exrB2 A: alpha complex topologyX: Cryptochrome/photolyase FAD-binding domain-related (From Homology)H: Cryptochrome/photolyase FAD-binding domain-relatedT: Fe-S cluster domain of DNA primaseF: DNA_primase_lrg_CECOD (1.6)
BDNA_primase_lrg_Ne5exrB1 A: alpha complex topologyX: PriB N-terminal domain-like (From Topology)H: PriB N-terminal domain-like (From Topology)T: PriB N-terminal domain-likeF: DNA_primase_lrg_NECOD (1.6)
FDNA_primase_lrg_Ce5exrF1 A: alpha complex topologyX: Cryptochrome/photolyase FAD-binding domain-related (From Homology)H: Cryptochrome/photolyase FAD-binding domain-relatedT: Fe-S cluster domain of DNA primaseF: DNA_primase_lrg_CECOD (1.6)
FDNA_primase_lrg_Ne5exrF2 A: alpha complex topologyX: PriB N-terminal domain-like (From Topology)H: PriB N-terminal domain-like (From Topology)T: PriB N-terminal domain-likeF: DNA_primase_lrg_NECOD (1.6)
CDNA_pol_B_exo1_2nde5exrC7 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: DNA_pol_B_exo1_2ndECOD (1.6)
CDNA_pol_B_2nde5exrC2 A: alpha bundlesX: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: thumb domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2ndECOD (1.6)
CDNA_pol_B_1st_1e5exrC3 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: DNA_pol_B_1st_1ECOD (1.6)
CDNA_pol_B_exo1_1st_1e5exrC5 A: a+b two layersX: Alpha-beta plaitsH: Family B DNA polymerase insertion domain (From Topology)T: Family B DNA polymerase insertion domainF: DNA_pol_B_exo1_1st_1ECOD (1.6)
CDNA_pol_B_exo1_3rde5exrC1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_exo1_3rdECOD (1.6)
Czf-DNA_Pol_Ne5exrC6 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: zf-DNA_Pol_NECOD (1.6)
Czf-DNA_Pol_Ce5exrC4 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: zf-DNA_Pol_CECOD (1.6)
GDNA_pol_B_exo1_2nde5exrG3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: DNA_pol_B_exo1_2ndECOD (1.6)
GDNA_pol_B_2nde5exrG4 A: alpha bundlesX: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology)H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology)T: thumb domain in bacteriophage RB69-like DNA polymerase IF: DNA_pol_B_2ndECOD (1.6)
GDNA_pol_B_1st_1e5exrG6 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: DNA_pol_B_1st_1ECOD (1.6)
GDNA_pol_B_exo1_1st_1e5exrG5 A: a+b two layersX: Alpha-beta plaitsH: Family B DNA polymerase insertion domain (From Topology)T: Family B DNA polymerase insertion domainF: DNA_pol_B_exo1_1st_1ECOD (1.6)
GDNA_pol_B_exo1_3rde5exrG7 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DNA_pol_B_exo1_3rdECOD (1.6)
Gzf-DNA_Pol_Ne5exrG1 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: zf-DNA_Pol_NECOD (1.6)
Gzf-DNA_Pol_Ce5exrG2 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc finger domain of DNA polymerase-alpha (From Topology)T: Zinc finger domain of DNA polymerase-alphaF: zf-DNA_Pol_CECOD (1.6)
DKOG1625_2nde5exrD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: KOG1625_2ndECOD (1.6)
DDNA_pol_E_Be5exrD2 A: a+b four layersX: Carbon-nitrogen hydrolase-likeH: Metallo-dependent phosphatases (From Topology)T: Metallo-dependent phosphatasesF: DNA_pol_E_BECOD (1.6)
HKOG1625_2nde5exrH1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: KOG1625_2ndECOD (1.6)
HDNA_pol_E_Be5exrH2 A: a+b four layersX: Carbon-nitrogen hydrolase-likeH: Metallo-dependent phosphatases (From Topology)T: Metallo-dependent phosphatasesF: DNA_pol_E_BECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.920.10 Alpha Beta Alpha-Beta Complex DNA primase, PRIM domain DNA primase, PRIM domainCATH (4.3.0)
E3.90.920.10 Alpha Beta Alpha-Beta Complex DNA primase, PRIM domain DNA primase, PRIM domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E
PF01896DNA primase small subunit (DNA_primase_S)DNA primase small subunit- Family
B, F
PF04104Eukaryotic and archaeal DNA primase, large subunit (DNA_primase_lrg)Eukaryotic and archaeal DNA primase, large subunit- Family
C, G
PF00136DNA polymerase family B (DNA_pol_B)DNA polymerase family B- Family
C, G
PF03104DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1)DNA polymerase family B, exonuclease domain- Family
D, H
PF04042DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B)DNA polymerase alpha/epsilon subunit B- Family
D, H
PF22062DNA polymerase alpha subunit B, OB domain (DPOA2_OB)DNA polymerase alpha subunit B, OB domainThis entry represents the OB domain of DNA polymerase alpha subunit B [1-4]. B subunits of DNA polymerases stabilize the catalytic subunit, play a role in regulation of the DNA synthesis in a cell cycle-dependent manner and act as scaffolds mediating ...This entry represents the OB domain of DNA polymerase alpha subunit B [1-4]. B subunits of DNA polymerases stabilize the catalytic subunit, play a role in regulation of the DNA synthesis in a cell cycle-dependent manner and act as scaffolds mediating interactions with other components of the replication machinery [1-4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
DNA primase small subunit
B, F
DNA primase large subunit
C, G
DNA polymerase alpha catalytic subunit
D, H
DNA polymerase alpha subunit B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR002755DNA primase, small subunitFamily
A, E
IPR014052DNA primase, small subunit, eukaryotic/archaealFamily
B, F
IPR016558DNA primase, large subunit, eukaryoticFamily
B, F
IPR007238DNA primase large subunit, eukaryotic/archaealFamily
C, G
IPR038256DNA polymerase alpha, zinc finger domain superfamilyHomologous Superfamily
C, G
IPR036397Ribonuclease H superfamilyHomologous Superfamily
C, G
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainDomain
C, G
IPR045846DNA polymerase alpha catalytic subunit, catalytic domainDomain
C, G
IPR017964DNA-directed DNA polymerase, family B, conserved siteConserved Site
C, G
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
C, G
IPR023211DNA polymerase, palm domain superfamilyHomologous Superfamily
C, G
IPR015088Zinc finger, DNA-directed DNA polymerase, family B, alphaDomain
C, G
IPR006172DNA-directed DNA polymerase, family BFamily
C, G
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C, G
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainDomain
C, G
IPR042087DNA polymerase family B, thumb domainHomologous Superfamily
C, G
IPR024647DNA polymerase alpha catalytic subunit, N-terminal domainDomain
D, H
IPR043034DNA polymerase alpha, subunit B, N-terminal domain superfamilyHomologous Superfamily
D, H
IPR007185DNA polymerase alpha/delta/epsilon, subunit BDomain
D, H
IPR054300DNA polymerase alpha subunit B, OB domainDomain
D, H
IPR013627DNA polymerase alpha, subunit B, N-terminalDomain
D, H
IPR016722DNA polymerase alpha, subunit BFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP49642
B, F
PharosP49643
C, G
PharosP09884
D, H
PharosQ14181