5ED0 | pdb_00005ed0

Structure of the Shigella flexneri VapC mutant D7N

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Glyco_hydro_31_2nd	e5ed0L1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
K	Glyco_hydro_31_2nd	e5ed0K1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
J	Glyco_hydro_31_2nd	e5ed0J1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
I	Glyco_hydro_31_2nd	e5ed0I1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
H	Glyco_hydro_31_2nd	e5ed0H1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
G	Glyco_hydro_31_2nd	e5ed0G1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
F	Glyco_hydro_31_2nd	e5ed0F1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
E	Glyco_hydro_31_2nd	e5ed0E1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
D	Glyco_hydro_31_2nd	e5ed0D1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
C	Glyco_hydro_31_2nd	e5ed0C1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
B	Glyco_hydro_31_2nd	e5ed0B1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)
A	Glyco_hydro_31_2nd	e5ed0A1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Enterocin 7A and 7B	T: Enterocin 7A and 7B	F: Glyco_hydro_31_2nd	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
K	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
J	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
I	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
H	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
G	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
F	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
E	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
D	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
C	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
B	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
A	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF01850	PIN domain (PIN)	PIN domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	tRNA(fMet)-specific endonuclease VapC	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding nuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002716	PIN domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029060	PIN-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR022907	VapC family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050556	Type II toxin-antitoxin system RNase	Family