5EAX
Crystal structure of Dna2 in complex with an ssDNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090890 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090891 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8090887 | 3000135 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Restriction endonuclease-like | 8090888 | 3000104 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Upf1 beta-barrel domain-like | 8090889 | 3002168 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Restriction endonuclease-like | 8090888 | 3000104 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Upf1 beta-barrel domain-like | 8090889 | 3002168 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090890 | 3002019 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8090887 | 3000135 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090891 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1805_2nd | e5eaxA5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: KOG1805_2nd | ECOD (1.6) |
A | Dna2_N | e5eaxA3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Dna2_N | ECOD (1.6) |
A | KOG1805_1st | e5eaxA1 | A: alpha arrays | X: 4Fe-4S binding domain in Dna2 | H: 4Fe-4S binding domain in Dna2 nuclease-helicase (From Topology) | T: 4Fe-4S binding domain in Dna2 nuclease-helicase | F: KOG1805_1st | ECOD (1.6) |
A | AAA_12 | e5eaxA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
A | AAA_11_1 | e5eaxA6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
A | Dna2_C | e5eaxA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Dna2_C | ECOD (1.6) |
C [auth B] | KOG1805_2nd | e5eaxB5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: KOG1805_2nd | ECOD (1.6) |
C [auth B] | Dna2_N | e5eaxB3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Dna2_N | ECOD (1.6) |
C [auth B] | KOG1805_1st | e5eaxB1 | A: alpha arrays | X: 4Fe-4S binding domain in Dna2 | H: 4Fe-4S binding domain in Dna2 nuclease-helicase (From Topology) | T: 4Fe-4S binding domain in Dna2 nuclease-helicase | F: KOG1805_1st | ECOD (1.6) |
C [auth B] | AAA_12 | e5eaxB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
C [auth B] | AAA_11_1 | e5eaxB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
C [auth B] | Dna2_C | e5eaxB6 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Dna2_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF21123 | Dna2 Rift barrel domain (Dna2_Rift) | Dna2 Rift barrel domain | This entry represents a Rift barrel domain found in the Dna2 protein [1]. This domain lies between the nuclease and helicase domains [1]. The Dna2 nuclease-helicase maintains genomic integrity by processing DNA double-strand breaks, Okazaki fragments ... | Domain |
A, C [auth B] | PF08696 | DNA replication factor Dna2 (Dna2) | DNA replication factor Dna2 | - | Family |
A, C [auth B] | PF13086 | AAA domain (AAA_11) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain |
A, C [auth B] | PF13087 | AAA domain (AAA_12) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain |