crystal structure of the active form of the proteolytic complex clpP1 and clpP2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Nd5e0sn_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Md5e0sm_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ld5e0sl_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Kd5e0sk_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Jd5e0sj_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Id5e0si_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Hd5e0sh_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Gd5e0sg_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Fd5e0sf_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ed5e0se_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Dd5e0sd_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Cd5e0sc_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Bd5e0sb_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)
Ad5e0sa_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase automated matches automated matches (Mycobacterium tuberculosis CDC1551 ) [TaxId: 83331 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth l]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
X [auth j]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
W [auth i]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
V [auth h]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
BA [auth n]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
AA [auth m]SCOP2B SuperfamilyClpP/crotonase 8038635 3000033 SCOP2B (2022-06-29)
U [auth g]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
T [auth f]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
S [auth e]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
R [auth d]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
Q [auth c]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
P [auth b]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
O [auth a]SCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyClpP/crotonase 8068493 3000033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth l]Glyco_hydro_31_2nde5e0sl1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
Y [auth k]Glyco_hydro_31_2nde5e0sk1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
X [auth j]Glyco_hydro_31_2nde5e0sj1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
W [auth i]Glyco_hydro_31_2nde5e0si1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
V [auth h]Glyco_hydro_31_2nde5e0sh1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
NGlyco_hydro_31_2nde5e0sN1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
MGlyco_hydro_31_2nde5e0sM1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
LGlyco_hydro_31_2nde5e0sL1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
KGlyco_hydro_31_2nde5e0sK1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
JGlyco_hydro_31_2nde5e0sJ1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
IGlyco_hydro_31_2nde5e0sI1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
HGlyco_hydro_31_2nde5e0sH1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
BA [auth n]Glyco_hydro_31_2nde5e0sn1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
AA [auth m]Glyco_hydro_31_2nde5e0sm1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
U [auth g]Glyco_hydro_31_2nde5e0sg1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
T [auth f]Glyco_hydro_31_2nde5e0sf1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
S [auth e]Glyco_hydro_31_2nde5e0se1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
R [auth d]Glyco_hydro_31_2nde5e0sd1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
Q [auth c]Glyco_hydro_31_2nde5e0sc1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
P [auth b]Glyco_hydro_31_2nde5e0sb1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
O [auth a]Glyco_hydro_31_2nde5e0sa1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
GGlyco_hydro_31_2nde5e0sG1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
FGlyco_hydro_31_2nde5e0sF1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
EGlyco_hydro_31_2nde5e0sE1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
DGlyco_hydro_31_2nde5e0sD1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
CGlyco_hydro_31_2nde5e0sC1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
BGlyco_hydro_31_2nde5e0sB1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)
AGlyco_hydro_31_2nde5e0sA1 A: alpha arraysX: Lipocalins/StreptavidinH: Enterocin 7A and 7BT: Enterocin 7A and 7BF: Glyco_hydro_31_2ndECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
Z [auth l]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Y [auth k]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
X [auth j]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
W [auth i]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
V [auth h]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
N3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
M3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
L3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
K3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
J3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
I3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
H3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
BA [auth n]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
AA [auth m]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
U [auth g]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
T [auth f]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
S [auth e]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
R [auth d]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
Q [auth c]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
P [auth b]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
O [auth a]3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
G3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
F3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
E3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
D3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
C3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
B3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
A3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00574Clp protease (CLP_protease)Clp proteaseThe Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.
Domain
A,
B,
C,
D,
E,
PF00574Clp protease (CLP_protease)Clp proteaseThe Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent Clp protease proteolytic subunit 1
A,
B,
C,
D,
E,
ATP-dependent Clp protease proteolytic subunit 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
IPR001907ATP-dependent Clp protease proteolytic subunitFamily
IPR033135ClpP, histidine active siteActive Site
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAFamily
A,
B,
C,
D,
E,
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR001907ATP-dependent Clp protease proteolytic subunitFamily
A,
B,
C,
D,
E,
IPR018215ClpP, Ser active siteActive Site
A,
B,
C,
D,
E,
IPR033135ClpP, histidine active siteActive Site
A,
B,
C,
D,
E,
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAFamily