5DHL
Crystal structure of Toxin, mutant N197W
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | MAC/CDC-like | 8052018 | 3002081 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | CDC membrane-sensing domain-like | 8037955 | 3000285 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MAC/CDC-like | 8052018 | 3002081 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | CDC membrane-sensing domain-like | 8037955 | 3000285 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17440 | e5dhlA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: PF17440 | ECOD (1.6) |
A | PF01289 | e5dhlA1 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: PF01289 | ECOD (1.6) |
B | PF17440 | e5dhlB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: PF17440 | ECOD (1.6) |
B | PF01289 | e5dhlB2 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: PF01289 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.840.10 | Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase | Chain A, domain 3 | CATH (utative) |
A | 3.30.1040.20 | Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor | Chain A | CATH (utative) |
A | 3.40.30.40 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | CATH (utative) |
A | 2.60.40.1430 | Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | CATH (utative) |
B | 3.90.840.10 | Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase | Chain A, domain 3 | CATH (utative) |
B | 3.30.1040.20 | Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor | Chain A | CATH (utative) |
B | 3.40.30.40 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | CATH (utative) |
B | 2.60.40.1430 | Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17440 | Thiol-activated cytolysin beta sandwich domain (Thiol_cytolys_C) | Thiol-activated cytolysin beta sandwich domain | This domain has an immunoglobulin like fold. It is found at the C-terminus of the thiol-activated cytolsin protein. | Domain | |
PF01289 | Thiol-activated cytolysin (Thiol_cytolysin) | Thiol-activated cytolysin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Perfringolysin O |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038700 | Thiol-activated cytolysin, C-terminal domain superfamily | Homologous Superfamily | |
IPR036359 | Thiol-activated cytolysin superfamily | Homologous Superfamily | |
IPR035390 | Thiol-activated cytolysin C-terminal | Domain | |
IPR001869 | Thiol-activated cytolysin | Family | |
IPR036363 | Thiol-activated cytolysin, alpha-beta domain superfamily | Homologous Superfamily |