5DCA
Crystal structure of yeast full length Brr2 in complex with Prp8 Jab1 domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth J] | d5dcaj_ | Alpha and beta proteins (a/b) | Cytidine deaminase-like | JAB1/MPN domain | automated matches | automated matches | Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth J] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053281 | 3001105 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02889 | e5dcaA15 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02889 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5dcaA12 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5dcaA14 | A: alpha arrays | X: HhH/H2TH | H: SAM-like subdomain in Sec63-like proteins (From Topology) | T: SAM-like subdomain in Sec63-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF02889 | e5dcaA13 | A: alpha arrays | X: Sec63 N-terminal subdomain-like (From Topology) | H: Sec63 N-terminal subdomain-like (From Topology) | T: Sec63 N-terminal subdomain-like | F: PF02889 | ECOD (1.6) |
A | PF18149 | e5dcaA2 | A: alpha arrays | X: PWI domain-like | H: PWI domain (From Topology) | T: PWI domain | F: PF18149 | ECOD (1.6) |
A | PF21188 | e5dcaA1 | A: alpha arrays | X: PWI domain-like | H: Pre-mRNA-splicing helicase BRR2 plug domain (From Topology) | T: Pre-mRNA-splicing helicase BRR2 plug domain | F: PF21188 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5dcaA11 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00270 | e5dcaA10 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
A | PF00271 | e5dcaA5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5dcaA3 | A: extended segments | X: Pre-mRNA-splicing helicase BRR2 NC-clamp (From Topology) | H: Pre-mRNA-splicing helicase BRR2 NC-clamp (From Topology) | T: Pre-mRNA-splicing helicase BRR2 NC-clamp | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth J] | PF08084 | e5dcaJ1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF08084 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 1.10.3380.10 | Mainly Alpha | Orthogonal Bundle | Sec63 N-terminal domain-like fold | Sec63 N-terminal domain-like domain | CATH (4.3.0) |
A | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 2.60.40.150 | Mainly Beta | Sandwich | Immunoglobulin-like | C2 domain | CATH (4.3.0) |
B [auth J] | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02889 | Sec63 Brl domain (Sec63) | Sec63 Brl domain | - | Family | |
PF21188 | Pre-mRNA-splicing helicase BRR2 plug domain (BRR2_plug) | Pre-mRNA-splicing helicase BRR2 plug domain | This entry represents the Plug domain from the Brr2 RNA helicase protein. The Brr2 helicase provides the key remodelling activity for spliceosome catalytic activation, during which it disrupts the U4/U6 di-snRNP (small nuclear RNA protein) [2]. The p ... | Domain | |
PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF18149 | N-terminal helicase PWI domain (Helicase_PWI) | N-terminal helicase PWI domain | This domain is found in spliceosomal RNA helicase Brr2. Brr2 is required for the assembly of a catalytically active spliceosome on a messenger RNA precursor. The domain is found in the N-terminal region and is non-canonically PWI-like. The PWI-like d ... | Domain | |
B [auth J] | PF08084 | PROCT (NUC072) domain (PROCT) | PROCT (NUC072) domain | The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1]. | Domain |