Annotations: 5DBL

Crystal structure of the Staphylococcus aureus SasG E1-G52 Y625W mutant

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	G5 domain-like	8090277	3002424	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G5 domain-like	8090275	3002424	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PemK_toxin	e5dblA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PemK_toxin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.20.230.10	Mainly Beta	Single Sheet	Resuscitation-promoting factor rpfb fold	Resuscitation-promoting factor rpfb.	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17041	E domain (SasG_E)	E domain	This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the Pfam:PF07501 domain and it has structural similarity with that domain alt ...	This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the Pfam:PF07501 domain and it has structural similarity with that domain although it is somewhat shorter [1]. The E domain forms part of a rod like structure.	Domain
A	PF07501	G5 domain (G5)	G5 domain	This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins in ...	This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Surface protein G	-	cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation cellular process single-species submerged biofilm formation aggregation of unicellular organisms submerged biofilm formation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005877	YSIRK Gram-positive signal peptide	Domain
A	IPR011098	G5 domain	Domain
A	IPR050436	Iron-regulated surface determinant protein A	Family
A	IPR031477	E domain	Domain
A	IPR019931	LPXTG cell wall anchor motif	Conserved Site

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.