Annotations: 5DAG

Crystal structure of PZP domain of human AF10 protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5dagA1	A: beta barrels	X: C-terminal additional helical subdomain in reovirus polymerase lambda3	H: C-terminal additional helical subdomain in reovirus polymerase lambda3	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F:	ECOD (v294.2)
A	WD40, Beta-prop_NOL10_N	e5dagA2	A: beta barrels	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: WD40, Beta-prop_NOL10_N	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13831	PHD-finger (PHD_2)	PHD-finger	-	Family
A	PF13832	PHD-zinc-finger like domain (zf-HC5HC2H_2)	PHD-zinc-finger like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein AF-10	DNA binding binding nucleic acid binding protein binding histone binding chromatin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding protein-containing complex binding nucleosome binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049775	AF-10, extended PHD finger	Domain
A	IPR001965	Zinc finger, PHD-type	Domain
A	IPR049781	AF-10/AF-17, PHD finger	Domain
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR050701	Histone Modification Regulator	Family
A	IPR019787	Zinc finger, PHD-finger	Domain
A	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A	IPR049773	AF10-like, coiled-coil domain	Domain
A	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A	IPR034732	Extended PHD (ePHD) domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P55197	renal cell carcinoma meningioma melanoma secretory meningioma psammomatous meningioma intraventricular meningioma spinal meningioma acute myeloid leukemia chromophobe renal cell carcinoma collecting duct carcinoma parasagittal meningioma fibrous meningioma transitional meningioma angiomatous meningioma microcystic meningioma renal cell carcinoma meningioma melanoma secretory meningioma psammomatous meningioma intraventricular meningioma spinal meningioma acute myeloid leukemia chromophobe renal cell carcinoma collecting duct carcinoma parasagittal meningioma fibrous meningioma transitional meningioma angiomatous meningioma microcystic meningioma cancer clear cell meningioma intraorbital meningioma sarcomatoid renal cell carcinoma meningothelial meningioma olfactory groove meningioma benign meningioma cerebral convexity meningioma papillary renal cell carcinoma gastroesophageal reflux disease Hemangiopericytic Meningioma lung cancer metabolic syndrome X attention deficit hyperactivity disorder, inattentive type oligodendroglioma breast carcinoma ovarian carcinoma glioblastoma psoriasis rheumatoid arthritis large cell medulloblastoma Sjogren syndrome lymphoplasmacyte-rich meningioma medulloblastoma acute T cell leukemia atypical teratoid rhabdoid tumor osteosarcoma papillary meningioma Pick disease gallbladder disease primitive neuroectodermal tumor renal carcinoma leukemia malignant ependymoma adenoma astrocytic tumor ovarian cancer clear cell renal carcinoma cutaneous melanoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.