5CYR
Crystal structure of Thosea asigna virus RNA-dependent RNA polymerase (RdRP) complexed with ATP and ssRNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | EUF08097 | e5cyrB2 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: EUF08097 | ECOD (1.6) |
A [auth B] | EUF08359 | e5cyrB1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase | F: EUF08359 | ECOD (1.6) |
B [auth A] | EUF08097 | e5cyrA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: EUF08097 | ECOD (1.6) |
B [auth A] | EUF08359 | e5cyrA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase | F: EUF08359 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF22152 | Permutotetravirus RNA-dependent RNA polymerase palm domain (Permu_RdRp_palm) | Permutotetravirus RNA-dependent RNA polymerase palm domain | This entry represents the palm domain of RdRp from Permutotetravirus, such as Thosea asigna virus (TaV) which is an insect virus that has a positive-sense ssRNA genome encoding a replicase and capsid proteins. The replicase has a non-canonical arrang ... | Domain |
A [auth B], B [auth A] | PF22260 | Permutotetravirus RNA-dependent RNA polymerase thumb domain (Permu_RdRp_thumb) | Permutotetravirus RNA-dependent RNA polymerase thumb domain | This helical bundle domain, known as the thumb domain, is found in the RNA-dependent RNA polymerase (RdRp) of the Permutotetravirus Thosea asigna virus (TaV), C-terminal to the palm domain (Pfam:PF22152). This domain is larger than the thumb domains ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |