5CXT
Crystal structure of a RNA-binding protein 39 (RBM39) in complex with fragment of splicing factor (U2AF) from Unknown at 2.20 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
I | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
K | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
M | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
O | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
Q | SCOP2B Superfamily | RNA-binding domain RBD | 8065229 | 3000110 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF15519 | e5cxtA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
C | PF15519 | e5cxtC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
E | PF15519 | e5cxtE1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
G | PF15519 | e5cxtG1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
I | PF15519 | e5cxtI1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
K | PF15519 | e5cxtK1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
M | PF15519 | e5cxtM1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
O | PF15519 | e5cxtO1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
Q | PF15519 | e5cxtQ1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF15519 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003954 | RNA recognition motif domain, eukaryote | Domain | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR006509 | Splicing factor, RBM39-like | Family | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR029123 | Splicing factor RBM39, linker | Domain | |
IPR006529 | U2 snRNP auxilliary factor, large subunit, splicing factor | Family | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |