5CWS
Crystal structure of the intact Chaetomium thermophilum Nsp1-Nup49-Nup57 channel nucleoporin heterotrimer bound to its Nic96 nuclear pore complex attachment site
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2 Family | Nup62-like | 8046767 | 4005288 | SCOP2 (2021-05-27) |
C | SCOP2 Superfamily | Nup62-like | 8053266 | 3002170 | SCOP2 (2021-05-27) |
I | SCOP2B Superfamily | Nup62-like | 8053266 | 3002170 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Nup54-like | 8053270 | 3002171 | SCOP2B (2021-05-27) |
K | SCOP2 Family | Nup54-like | 8049315 | 4006450 | SCOP2 (2021-05-27) |
K | SCOP2 Superfamily | Nup54-like | 8053270 | 3002171 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07654 | e5cwsA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A | PF07686 | e5cwsA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G | PF07654 | e5cwsG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G | PF07686 | e5cwsG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H | PF07654 | e5cwsH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H | PF07686 | e5cwsH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B | PF07654 | e5cwsB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B | PF07686 | e5cwsB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J | PF21121 | e5cwsJ1 | A: alpha bundles | X: Nucleoporin p58/p45 helical region (From Topology) | H: Nucleoporin p58/p45 helical region (From Topology) | T: Nucleoporin p58/p45 helical region | F: PF21121 | ECOD (1.6) |
E | PF18570 | e5cwsE1 | A: extended segments | X: Nup54 C-terminal interacting domain (From Topology) | H: Nup54 C-terminal interacting domain (From Topology) | T: Nup54 C-terminal interacting domain | F: PF18570 | ECOD (1.6) |
K | PF18570 | e5cwsK1 | A: extended segments | X: Nup54 C-terminal interacting domain (From Topology) | H: Nup54 C-terminal interacting domain (From Topology) | T: Nup54 C-terminal interacting domain | F: PF18570 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
sAB-158 Fab | L-KAPPA | Homo sapiens (human) | IGKV1D-13*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202428-2) | |
sAB-158 Fab | VH-CH1 | Homo sapiens (human) | IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGKV1 | Kappa | nucleoporin nup57 | nucleoporin nsp1 | nucleoporin nup49 | nucleoporin nic96 | SAbDab (2024-07-12) | |
Heavy Chain | IGHV3 | - | nucleoporin nup57 | nucleoporin nsp1 | nucleoporin nup49 | nucleoporin nic96 | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05064 | Nsp1-like C-terminal region (Nsp1_C) | Nsp1-like C-terminal region | - | Family | |
PF21121 | Nucleoporin Nup49 C-terminal helical region (Nup49_C) | Nucleoporin Nup49 C-terminal helical region | - | Family | |
PF18570 | NUP57/Nup54 C-terminal domain (Nup54_57_C) | NUP57/Nup54 C-terminal domain | - | Coiled-coil | |
PF13874 | Nucleoporin complex subunit 54 (Nup54) | Nucleoporin complex subunit 54 | This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007758 | Nucleoporin, NSP1-like, C-terminal | Domain | |
IPR025574 | Nucleoporin FG repeat | Repeat | |
IPR026010 | Nucleoporin NSP1/NUP62 | Family | |
IPR024882 | Nucleoporin p58/p45/NUP49 | Family | |
IPR025574 | Nucleoporin FG repeat | Repeat | |
IPR025712 | Nucleoporin Nup54, alpha-helical domain | Domain | |
IPR024864 | Nucleoporin Nup54/Nup57/Nup44 | Family | |
IPR007231 | Nucleoporin interacting component Nup93/Nic96 | Family |