Annotations: 5CW7

Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	FRB_dom	e5cw7P1	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
N	Fer4, Fer4_7, Fer4_10	e5cw7N1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Fer4, Fer4_7, Fer4_10	ECOD (v295.2)
L	SelB-wing_3	e5cw7L1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: SelB-wing_3	ECOD (v295.2)
J	VWA	e5cw7J1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: VWA	ECOD (v295.2)
H	tRNA_anti-codon	e5cw7H1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: tRNA_anti-codon	ECOD (v295.2)
F	DnaJ	e5cw7F1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
D		e5cw7D1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F:	ECOD (v295.2)
B	p450	e5cw7B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: p450	ECOD (v295.2)
O	DnaJ	e5cw7O1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
M	DnaJ	e5cw7M1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
K	DnaJ	e5cw7K1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
I	DnaJ	e5cw7I1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
G	DnaJ	e5cw7G1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
E	DnaJ	e5cw7E1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
C	DnaJ	e5cw7C1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)
A	DnaJ	e5cw7A1	A: alpha arrays	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
N	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
L	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
J	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
H	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
F	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
D	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
B	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P	PF05016	ParE toxin of type II toxin-antitoxin system, parDE (ParE_toxin)	ParE toxin of type II toxin-antitoxin system, parDE	ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralised by the antitoxin ParD. The family also encompasses RelE/ParE described in [2].	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	PF21217	Stability determinant (PaaA2)	Stability determinant	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	Plasmid stabilization protein ParE	-	-	-
A, C, E, G, I A, C, E, G, I, K, M, O	PAAA2	molecular adaptor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR007712	Toxin-antitoxin system, RelE/ParE toxin family	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR051803	Type II TA system RelE-like toxin	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR035093	Toxin-antitoxin system, RelE/ParE toxin domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR048851	Stability determinant domain	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.