5CRX
ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d5crxa1 | All alpha proteins | SAM domain-like | lambda integrase-like, N-terminal domain | lambda integrase-like, N-terminal domain | Cre recombinase | (Punavirus P1 ) [TaxId: 10678 ], | SCOPe (2.08) |
C [auth A] | d5crxa2 | Alpha and beta proteins (a+b) | DNA breaking-rejoining enzymes | DNA breaking-rejoining enzymes | Lambda integrase-like, catalytic core | Cre recombinase | (Punavirus P1 ) [TaxId: 10678 ], | SCOPe (2.08) |
D [auth B] | d5crxb1 | All alpha proteins | SAM domain-like | lambda integrase-like, N-terminal domain | lambda integrase-like, N-terminal domain | Cre recombinase | (Punavirus P1 ) [TaxId: 10678 ], | SCOPe (2.08) |
D [auth B] | d5crxb2 | Alpha and beta proteins (a+b) | DNA breaking-rejoining enzymes | DNA breaking-rejoining enzymes | Lambda integrase-like, catalytic core | Cre recombinase | (Punavirus P1 ) [TaxId: 10678 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | INT_Cre_C | e5crxA2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
C [auth A] | Phage_integrase_N | e5crxA5 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
C [auth A] | Phage_int_SAM_4 | e5crxA6 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
D [auth B] | INT_Cre_C | e5crxB2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
D [auth B] | Phage_integrase_N | e5crxB1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
D [auth B] | Phage_int_SAM_4 | e5crxB3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
C [auth A] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
D [auth B] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
D [auth B] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
C [auth A], D [auth B] | PROTEIN (BACTERIOPHAGE P1 CRE GENE) | - | ||
A [auth C], B [auth D] | DNA (35-MER) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR011010 | DNA breaking-rejoining enzyme, catalytic core | Homologous Superfamily |
C [auth A], D [auth B] | IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily |
C [auth A], D [auth B] | IPR052925 | Phage Integrase-like Recombinase | Family |
C [auth A], D [auth B] | IPR044068 | Core-binding (CB) domain | Domain |
C [auth A], D [auth B] | IPR002104 | Integrase, catalytic domain | Domain |
C [auth A], D [auth B] | IPR013762 | Integrase-like, catalytic domain superfamily | Homologous Superfamily |