5CQC

Crystal structure of the legionella pneumophila effector protein RavZ

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF22225	e5cqcA2	A: alpha bundles	X: RavZ C-terminal domain (From Topology)	H: RavZ C-terminal domain (From Topology)	T: RavZ C-terminal domain	F: PF22225	ECOD (1.6)
A	F_UNCLASSIFIED	e5cqcA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22225	RavZ C-terminal PI3P-binding domain (RavZ_C)	RavZ C-terminal PI3P-binding domain	The intracellular pathogen L. pneumophila interferes with autophagy by delivering an effector protein, RavZ, into the host cytosol. This effector protein cleaves membrane-conjugated Atg8/LC3 proteins from pre-autophagosomal structures. RavZ is a two ...	The intracellular pathogen L. pneumophila interferes with autophagy by delivering an effector protein, RavZ, into the host cytosol. This effector protein cleaves membrane-conjugated Atg8/LC3 proteins from pre-autophagosomal structures. RavZ is a two domain protein consisting of an N-terminal catalytic domain and a C-terminal phosphatidylinositol 3-phosphate (PI3P)-binding domain [1]. RavZ targets the autophagosome via the PI3P-binding domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	putative RavZ protein	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity binding phospholipid binding lipid binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding phosphatidylinositol binding	organonitrogen compound metabolic process macromolecule modification protein delipidation metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process proteolysis symbiont-mediated perturbation of host cellular process catabolic process biological process involved in interspecies interaction between organisms cellular metabolic process autophagy organonitrogen compound metabolic process macromolecule modification protein delipidation metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process proteolysis symbiont-mediated perturbation of host cellular process catabolic process biological process involved in interspecies interaction between organisms cellular metabolic process autophagy symbiont-mediated perturbation of host autophagy biological process involved in interaction with host biological process involved in symbiotic interaction cellular catabolic process symbiont-mediated suppression of host autophagy modulation by symbiont of host process cellular process process utilizing autophagic mechanism modulation of process of another organism	membrane cellular anatomical entity extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane host cell cytoplasmic vesicle membrane host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell cytoplasm host cell part host intracellular region

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.