5BV0
Crystal Structure of a Complex Between the SNARE Nyv1 and the HOPS Vps33-Vps16 subcomplex from Chaetomium thermophilum
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec1_3rd | e5bv0A2 | A: alpha complex topology | X: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology) | H: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology) | T: alpha-helical domain in sec1/munc18-like (SM) proteins | F: Sec1_3rd | ECOD (1.6) |
A | Sec1_2nd | e5bv0A4 | A: a/b three-layered sandwiches | X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | T: Rossmann-like domains in Sec1/munc18-like proteins | F: Sec1_2nd | ECOD (1.6) |
A | Sec1_1st | e5bv0A3 | A: a/b three-layered sandwiches | X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | T: Rossmann-like domains in Sec1/munc18-like proteins | F: Sec1_1st | ECOD (1.6) |
B | Vps16_C | e5bv0B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps16_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2060 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Sec1/Munc18 (SM) protein, domain 1 | CATH (4.3.0) |
A | 3.40.50.1910 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Sec1/Munc18 (SM) protein, domain 2 | CATH (4.3.0) |
A | 3.90.830.10 | Alpha Beta | Alpha-Beta Complex | Syntaxin Binding Protein 1 | Chain A, domain 2 | CATH (4.3.0) |
A | 1.25.40.850 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Sec1/Munc18 (SM) protein, domain 3b | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00995 | Sec1 family (Sec1) | Sec1 family | - | Family | |
PF00957 | Synaptobrevin (Synaptobrevin) | Synaptobrevin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR043154 | Sec1-like, domain 1 | Homologous Superfamily | |
IPR036045 | Sec1-like superfamily | Homologous Superfamily | |
IPR027482 | Sec1-like, domain 2 | Homologous Superfamily | |
IPR043127 | Sec1-like, domain 3a | Homologous Superfamily | |
IPR001619 | Sec1-like protein | Family | |
IPR043155 | Vacuolar protein sorting-associated protein 33, domain 3b | Homologous Superfamily | |
IPR016534 | Vacuolar protein sorting-associated protein 16 | Family | |
IPR006925 | Vps16, C-terminal | Domain | |
IPR038132 | Vps16, C-terminal domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR006926 | Vps16, N-terminal | Domain | |
IPR010908 | Longin domain | Domain | |
IPR001388 | Synaptobrevin-like | Family | |
IPR042855 | v-SNARE, coiled-coil homology domain | Domain | |
IPR051097 | Synaptobrevin-like vesicular transport protein | Family | |
IPR011012 | Longin-like domain superfamily | Homologous Superfamily |