5AMR
Structure of the La Crosse Bunyavirus polymerase in complex with the 3' viral RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | LACV replicase polymerase domain-like | 8045558 | 4004532 | SCOP2 (2021-05-27) |
A | SCOP2 Family | LACV replicase endonuclease domain-like | 8051321 | 4007307 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8090962 | 3001272 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Restriction endonuclease-like | 8090963 | 3000104 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04196,PF21561 | e5amrA4 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF04196,PF21561 | ECOD (1.6) |
A | PF04196 | e5amrA3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF04196 | ECOD (1.6) |
A | PF04196 | e5amrA2 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: PF04196 | ECOD (1.6) |
A | PF21561 | e5amrA5 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: PF21561 | ECOD (1.6) |
A | PF15518 | e5amrA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF15518 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15518 | L protein N-terminus (L_protein_N) | L protein N-terminus | This endonuclease domain is found at the N-terminus of many bunyavirus L proteins [1]. | Domain | |
PF21561 | Virus, RNA-directed RNA polymerase L, thumb ring domain (L_thumb_ring_vir) | Virus, RNA-directed RNA polymerase L, thumb ring domain | This domain is found in RNA-directed RNA polymerase L from Bunyavirus La Crosse (L) and similar viral sequences. This entry represents the thumb ring domain, which shows an alpha-beta structure that is structurally homologous to the influenza PB2 N1 ... | Domain | |
PF04196 | Bunyavirus RNA dependent RNA polymerase (Bunya_RdRp) | Bunyavirus RNA dependent RNA polymerase | - | Family | |